Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9 132 4e-26 >seq9 Length=31548187 Score = 132 bits (146), Expect = 4e-26 Identities = 360/546 (66%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || |||||||||| ||||||||| || | ||| ||| | Sbjct 1132157 TACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCG 1132216 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | ||| || || | || ||| | || ||| | || Sbjct 1132217 CGCCACTGGGATGCCGCGCTG-TCGTCCGACGAGCGCCACTTCGTCTCCCACGTGCTCGC 1132275 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| ||||| ||||| | | ||| | || Sbjct 1132276 CTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGA 1132335 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||||| || | |||||||| ||||||||||||||||| ||||| ||||| |||| Sbjct 1132336 CGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 1132395 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393 ||||||||||||| |||| |||| ||||||||| | || | | || | | || | Sbjct 1132396 CTCGGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG-GACC 1132454 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | | ||| |||||||| || | || || ||| || || || || |||||| | Sbjct 1132455 GCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGC 1132514 Query 61454 ATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| || |||| | || | || || | | || || || || Sbjct 1132515 GATGGATC-----GACGGCGGCGAGCGCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGT 1132569 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| || || || ||| ||||| ||| | ||||| || ||||| Sbjct 1132570 CGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACT 1132629 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || |||||| ||| ||| | || || ||||||||||| | || || || Sbjct 1132630 CATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGA 1132689 Query 61632 TTTTGC 61637 || || Sbjct 1132690 CTTCGC 1132695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567941855680