Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq4 291 9e-74 seq1 116 4e-21 seq5 91.5 2e-13 seq11 86.0 7e-12 >seq4 Length=26741765 Score = 291 bits (322), Expect = 9e-74 Identities = 308/403 (76%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 160141 TGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGC 160200 |||||||||||| || || ||| ||||| ||||| ||||| ||||||||| || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 160201 TCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTC 160260 ||| || || |||||| | ||||| ||| | | ||||| | ||||| || |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 160261 CGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGA 160320 |||| ||||||| | || || ||| ||||||| |||| |||| |||||||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 160321 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATC 160380 || || |||||||||||||| || |||||| | ||||| ||||| ||||| | || || Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 160381 TCTGTTC-TCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAG 160439 || ||| |||||||||||| ||| |||| || |||||| | |||| || || || | Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTG 188588 Query 160440 AAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCG 160499 ||| || || || | ||||||| || |||||||||||||||||||| || || | Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 160500 TCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGC 160542 | || || ||||| || || || || || |||||||||||||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Score = 275 bits (304), Expect = 7e-69 Identities = 259/330 (78%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 160460 GGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTC 160519 ||||||| || |||||||||||||||||||| || || || || || ||||| || || Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 160520 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTC 160579 || || || |||||||||||||| ||||||||||| || ||| | ||||||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 160580 GCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTC 160639 |||||||||||||| || || || ||||||||||| | ||| || ||| ||||| ||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 160640 AATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAAC 160699 ||||| || || ||||| |||||||| || | | || | |||||| | ||| | || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 160700 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAAC 160759 |||||||| || | | ||||| ||| ||| || |||||||| |||||||| ||||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 160760 GCTCACAACTTCCCTCTCGACCTTGCTGCT 160789 ||||||||||||||||| ||||| |||||| Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 >seq1 Length=46529941 Score = 116 bits (128), Expect = 4e-21 Identities = 137/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | | || ||||| |||||||| || |||||||| || | |||||| Sbjct 26428800 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 26428741 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 26428740 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 26428681 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAATTTTCTT-ACAGCGGCAG 161704 |||||||||||| | || ||||||||| | | ||| ||||| |||||| || || |||| Sbjct 26428680 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 26428623 Query 161705 TT 161706 || Sbjct 26428622 TT 26428621 >seq5 Length=38039368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 160604 TGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAAC 160663 ||||||||||| | ||| || || ||||| |||||||| || || ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 160664 CAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGC 160723 || || | | || | |||||| | ||| | | |||||||| || | | ||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 160724 GCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAAC 160768 || ||| | |||||||| |||||||| ||||| |||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq11 Length=27185770 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 160718 AACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTC 160777 ||||| ||| ||| || |||||||| |||||||| ||||| ||||||||||||||||| Sbjct 25910910 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 25910851 Query 160778 GACCTTGCTGCT 160789 ||||| |||||| Sbjct 25910850 GACCTAGCTGCT 25910839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551375917293600