Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq4 260 2e-64 seq11 87.8 2e-12 >seq4 Length=26741765 Score = 260 bits (288), Expect = 2e-64 Identities = 273/359 (76%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 189478 GAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACG 189537 ||||||||||||| ||| || || | ||||||| ||||| ||||| ||||| || Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 189538 TACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTC 189597 || || || || || |||||||| ||||| || || | |||||||||||||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 189598 AACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTT 189657 |||||||| ||||| | ||||||||| | ||||| ||||| || || || || ||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 189658 ACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCC 189717 || || | || | || || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 189718 ATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGT 189777 | ||||| | |||||||| ||| | || || ||||| || | ||||||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 189778 CTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 |||||||||||||| ||||| || ||||| ||||||||||||||||| || || || || Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 12116577 Score = 244 bits (270), Expect = 1e-59 Identities = 300/405 (74%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 189189 TGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGAT--CTGCATTGCTTACTCT 189246 |||||||||||| || || ||| ||||| ||||||||||| ||| |||| || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTG--TTGCATATTCA 188830 Query 189247 GCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTC 189306 || ||||||||||| || |||| || || || | || ||| |||||||||| |||| Sbjct 188829 GCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTC 188770 Query 189307 TCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCA 189366 ||||| | ||||| || || || | | || ||||||| ||| |||| ||||| ||| Sbjct 188769 TCTGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCA 188710 Query 189367 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGT 189426 ||||| |||||||| ||||| || || |||||| | || || || ||||| || | ||| Sbjct 188709 GAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGT 188650 Query 189427 TCACTGTTC-TCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCAC 189485 || || ||| || ||||||||||| | || |||||| || | | |||||||| Sbjct 188649 TCCCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCAC 188590 Query 189486 TGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACAT 189545 ||||| ||| || || | ||||||| ||||| ||||| ||||| || || || || Sbjct 188589 TGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATAT 188530 Query 189546 CGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGC 189590 || || |||||||| ||||| || || | |||||||||||||| Sbjct 188529 TGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 >seq11 Length=27185770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 189764 TCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTC 189823 ||||||||||| ||||||||||||||| ||||| || ||||| |||||||||||||||| Sbjct 25910912 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 25910853 Query 189824 TTGATCTGGCAGC 189836 | || || || || Sbjct 25910852 TAGACCTAGCTGC 25910840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634079904888000