Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq4 280 2e-70 seq11 104 3e-17 seq5 96.9 4e-15 seq1 82.4 9e-11 >seq4 Length=26741765 Score = 280 bits (310), Expect = 2e-70 Identities = 278/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 161199 GAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 161258 ||||||||||| ||||| || || | ||||||| ||||||||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 161259 TACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 161318 || || || || || ||||||||||| || || || | ||||||||||| ||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 161319 AACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTC 161378 |||||||| ||||| || ||||||||| | || || |||||||| || || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 161379 ACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCC 161438 ||||| | ||| | || ||||| ||||| || ||||||||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 161439 ATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAAC 161498 | | ||| | || || || | || || |||||||| | | || |||||||| Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 161499 CTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCT 161558 ||||||||||||||||||||||| ||||||||||||||||||||||| || || |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 269 bits (298), Expect = 3e-67 Identities = 303/403 (75%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 160911 GAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCA 160970 ||||||||||| | || || || || || || ||||| ||||||||||| || Sbjct 188885 GAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCT 188827 Query 160971 CCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 161030 |||||||| ||||| | || || ||| | | || ||| | |||||||| ||||||| Sbjct 188826 CCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 188767 Query 161031 GATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAA 161090 ||||||||||| | || || ||| |||| |||||||| ||| |||| ||||||||||| Sbjct 188766 GATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 188707 Query 161091 CACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCT 161150 || |||||||| ||||| || || |||||||| ||||| |||||||| || | ||||| Sbjct 188706 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCC 188647 Query 161151 CTGTTC-TCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGA 161209 || ||| || ||||||||||| |||| || ||| || | | ||||||||||| Sbjct 188646 CTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGA 188587 Query 161210 GAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGT 161269 ||||| || || | ||||||| ||||||||||| |||||||| || || || || Sbjct 188586 AAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGT 188527 Query 161270 CGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCT 161312 || ||||||||||| || || || | ||||||||||| ||| Sbjct 188526 GGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq11 Length=27185770 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 161487 AATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTG 161546 || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 25910910 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 25910851 Query 161547 GATCTCGCTGCT 161558 || || |||||| Sbjct 25910850 GACCTAGCTGCT 25910839 >seq5 Length=38039368 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 161373 TGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAAC 161432 ||||||||||| | ||| | || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 161433 CAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGT 161492 || || | | ||| | || || || | | || |||||||| | | || ||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 161493 GCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAAC 161537 || || |||| |||||||||||||||||| |||||||||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq1 Length=46529941 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||||| | | | || || ||||| ||||| || |||||||| || | |||| Sbjct 26428802 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 26428743 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || || Sbjct 26428742 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 26428683 Query 164017 GGTACACCCACGG 164029 |||| ||||| || Sbjct 26428682 GGTATACCCATGG 26428670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559327916100800