Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6 387 2e-105 seq3 387 2e-105 seq4 149 9e-34 >seq6 Length=30401905 Score = 387 bits (428), Expect = 2e-105 Identities = 243/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 4523354 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 4523411 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 4523412 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 4523471 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||| Sbjct 4523472 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGGATACATCAGTGTAGCGCGCGTGCG 4523531 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4523532 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 4523591 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 4523592 GGCCATAGTCCCTCTAA 4523608 >seq3 Length=46202548 Score = 387 bits (428), Expect = 2e-105 Identities = 243/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 13432231 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 13432288 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 13432289 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 13432348 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||| Sbjct 13432349 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGGATACATCAGTGTAGCGCGCGTGCG 13432408 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13432409 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 13432468 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 13432469 GGCCATAGTCCCTCTAA 13432485 >seq4 Length=32292456 Score = 149 bits (164), Expect = 9e-34 Identities = 96/101 (95%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 20 AGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAAT 79 |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 28771264 AGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-CCTCGTTGAAGACCAACAAT 28771321 Query 80 TGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 |||||||||||||||||||||||||||||||| | |||||| Sbjct 28771322 TGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 28771362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751929422920