Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3 237 3e-60 seq1 163 5e-38 seq11 154 3e-35 >seq3 Length=46202548 Score = 237 bits (262), Expect = 3e-60 Identities = 202/245 (82%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 13433122 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 13433063 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 13433062 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 13433004 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 13433003 CAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 13432944 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 13432943 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 13432885 Query 314 AGGGG 318 |||| Sbjct 13432884 GGGGG 13432880 Score = 96.9 bits (106), Expect = 6e-18 Identities = 93/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 13439925 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 13439866 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||| | |||||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 13439865 ATAACATCATAGGA-TTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 13439810 >seq1 Length=43445878 Score = 163 bits (180), Expect = 5e-38 Identities = 144/177 (81%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 25650833 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 25650892 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 25650893 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 25650951 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 25650952 CAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 25651008 Score = 118 bits (130), Expect = 2e-24 Identities = 131/167 (78%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 25651324 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 25651383 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCTAGGACCGCCGTAATGATTA 192 |||| | |||||| | |||| ||||| |||||| ||| | || |||||||||| Sbjct 25651384 ATAACATCATAGGA-TTCCGGTCCTATTGTGTTGGCCTTCGGGAGTCGGAGTAATGATTA 25651442 Query 193 ATAGGGATAGTCGGGGG-TGTCAGTATTCAATTG-TCAGAGGTGAAA 237 | | ||| ||||||||| || ||||| || | |||||||||||| Sbjct 25651443 ACA-GGACAGTCGGGGGCATTCGGTATTTCATAGTTCAGAGGTGAAA 25651488 >seq11 Length=21200727 Score = 154 bits (170), Expect = 3e-35 Identities = 132/162 (81%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||| | |||||| | ||| || ||||||||||||||||| ||||||||| | || Sbjct 18217813 CTACTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGT 18217872 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || |||||| ||||||||||||||||||| ||||| ||| ||| ||||||| || Sbjct 18217873 ATTTCATAGTCAGAAGTGAAATTCTTGGATTTATGAAAGACGAACAACTACGAAAGCATT 18217932 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| ||||||||||| |||| Sbjct 18217933 TGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 18217973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915111335424