Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq10 167 5e-39 seq8 167 5e-39 seq4 167 5e-39 seq3 159 7e-37 seq2 154 3e-35 seq5 107 4e-21 seq9 100 6e-19 >seq10 Length=17164355 Score = 167 bits (184), Expect = 5e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 85077 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 85136 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 85137 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 85193 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 85194 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 85253 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 85254 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 85305 >seq8 Length=23026653 Score = 167 bits (184), Expect = 5e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 17310906 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 17310965 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 17310966 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 17311022 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 17311023 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 17311082 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 17311083 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 17311134 Score = 167 bits (184), Expect = 5e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 17334771 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 17334712 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 17334711 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 17334655 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 17334654 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 17334595 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 17334594 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 17334543 Score = 167 bits (184), Expect = 5e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 17341670 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 17341611 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 17341610 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 17341554 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 17341553 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 17341494 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 17341493 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 17341442 >seq4 Length=32292456 Score = 167 bits (184), Expect = 5e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 2818843 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 2818902 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 2818903 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 2818959 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 2818960 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 2819019 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 2819020 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 2819071 >seq3 Length=46202548 Score = 159 bits (176), Expect = 7e-37 Identities = 171/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 13413249 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 13413190 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 13413189 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 13413133 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 13413132 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 13413073 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCT 332 ||||| || ||||| ||||||||||| ||||||||||| ||| || Sbjct 13413072 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCT 13413028 >seq2 Length=36083738 Score = 154 bits (170), Expect = 3e-35 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 16820834 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 16820775 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || | | ||| | | |||||||||||| |||| Sbjct 16820774 GTGCAAAGGTTTCCTCGGGCCAGACGTA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 16820718 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 16820717 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 16820658 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| | ||||| ||||||||||| || |||||||| ||| || |||||| Sbjct 16820657 GGTGCCAAGTGGAAGGGCCGTCGCTCAACAGATAAAAGTTACTCTAGGGATA 16820606 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 20559687 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 20559628 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| || | ||| | || || | || || | ||| Sbjct 20559627 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 20559573 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 20559572 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 20559513 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 20559512 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 20559462 >seq5 Length=25164199 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 2351001 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 2350942 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| || | ||| | || || | || || | ||| Sbjct 2350941 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 2350887 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 2350886 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 2350827 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 2350826 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 2350776 Score = 93.3 bits (102), Expect = 8e-17 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 216 AAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCT 275 ||||||| ||||| | || ||||| | || | | ||| |||| |||||||||||| || Sbjct 3246409 AAAGGCAGAAGGGAGCTTAACTGCAAGACTCACCCGTCGAGCAAAGACGAAAGTCGGCCT 3246468 Query 276 TAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335 | ||||| | |||||| || | ||| ||| ||||||| |||||||||| ||| || | Sbjct 3246469 CAGTGATCAGACGGTGCCGAGTAGAAGGGCTGTCGCTCAACGGATAAAAATTACTCTAGA 3246528 Query 336 GATA 339 |||| Sbjct 3246529 GATA 3246532 >seq9 Length=22605696 Score = 100 bits (110), Expect = 6e-19 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 16999214 GGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGT 16999155 Query 171 GCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | | ||| || ||| ||| | ||| | || ||| || || | ||| | Sbjct 16999154 GTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGCA-----TAATGGTATAAGCCT 16999100 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||| || ||| || ||| | ||| |||||||||| | | || |||||| | | Sbjct 16999099 GCCTGACTGTGAAACCGACAGGTCGAACAGAGACGAAAGTCAGCCATAGTGATCCAGGAG 16999040 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 16999039 TCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 16998990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982304825088