Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq10 199 1e-48 seq8 199 1e-48 seq4 199 1e-48 seq3 199 1e-48 seq2 136 1e-29 seq11 104 6e-20 >seq10 Length=17164355 Score = 199 bits (220), Expect = 1e-48 Identities = 306/421 (73%), Gaps = 19/421 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 83550 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 83494 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 83493 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 83438 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 83437 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 83380 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 83379 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 83320 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 83319 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 83260 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 83259 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 83201 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 83200 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 83141 Query 420 G 420 | Sbjct 83140 G 83140 >seq8 Length=23026653 Score = 199 bits (220), Expect = 1e-48 Identities = 306/421 (73%), Gaps = 19/421 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 17343750 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 17343806 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 17343807 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 17343862 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 17343863 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 17343920 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 17343921 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 17343980 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 17343981 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 17344040 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 17344041 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 17344099 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 17344100 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 17344159 Query 420 G 420 | Sbjct 17344160 G 17344160 Score = 178 bits (196), Expect = 3e-42 Identities = 301/421 (71%), Gaps = 19/421 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 17337069 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 17337125 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || | |||| || | || Sbjct 17337126 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CAGGTCCATAAGC-AGT 17337181 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 17337182 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 17337239 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||| | | | |||| | ||| ||| |||| |||| | || Sbjct 17337240 ACCAAGCCACTGCCTATGAGTCACCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 17337299 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 17337300 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 17337359 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||| ||||||||||||| ||| |||||||||| ||| ||||| Sbjct 17337360 G-GGGGTTCTTTTCACCTTTTCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 17337418 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||| ||||| | | |||||| | ||||| | || | ||||| || | |||||| Sbjct 17337419 TTATCCTTGCAAGGTGGTCCTTGCTGATTCACGCGGGATTCCACGTGCCCCATGCTACTC 17337478 Query 420 G 420 | Sbjct 17337479 G 17337479 Score = 176 bits (194), Expect = 1e-41 Identities = 256/352 (73%), Gaps = 15/352 (4%) Strand=Plus/Minus Query 78 TTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACG 137 |||| |||| ||| ||||||||| ||| | || |||||| || | || ||| | || Sbjct 17309245 TTCATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGTGACAAT-CG 17309190 Query 138 CCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----AGCTTTGCCA 191 ||||| |||||||||||| ||||||| |||| | ||| ||| | | |||| Sbjct 17309189 CCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTAACCAAGCCA 17309131 Query 192 CTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCT 251 ||| || |||||| | | |||| | ||| ||| |||| |||| | || | || Sbjct 17309130 CTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTCCCCT 17309071 Query 252 CCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 ||||||||||| || | |||||||| | ||||||||||| ||| || ||||||| Sbjct 17309070 CCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTC 17309012 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 ||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||||| Sbjct 17309011 TTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTG 17308952 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 17308951 CAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 17308900 >seq4 Length=32292456 Score = 199 bits (220), Expect = 1e-48 Identities = 306/421 (73%), Gaps = 19/421 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 2817316 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 2817260 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 2817259 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 2817204 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 2817203 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 2817146 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 2817145 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 2817086 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 2817085 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 2817026 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 2817025 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 2816967 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 2816966 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 2816907 Query 420 G 420 | Sbjct 2816906 G 2816906 Score = 80.6 bits (88), Expect = 7e-13 Identities = 66/79 (84%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| || Sbjct 20666459 ACGGTTTCATGTTCTATTTCACTACCCACTG-GGGGTTCTTTTTACCTTTCCCTCATGGC 20666517 Query 330 ACTAGTTCACTATCGGTCA 348 |||| ||| ||||| |||| Sbjct 20666518 ACTACTTCGCTATCAGTCA 20666536 >seq3 Length=46202548 Score = 199 bits (220), Expect = 1e-48 Identities = 306/421 (73%), Gaps = 19/421 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 13414776 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 13414832 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 13414833 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 13414888 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 13414889 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 13414946 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 13414947 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 13415006 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 13415007 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 13415066 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 13415067 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 13415125 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 13415126 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 13415185 Query 420 G 420 | Sbjct 13415186 G 13415186 >seq2 Length=36083738 Score = 136 bits (150), Expect = 1e-29 Identities = 135/173 (78%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 251 TCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 |||||||||||| || | |||||||| | ||||||||||| ||| || |||||| Sbjct 21744487 TCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTT 21744429 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| ||||||||||||||||||| ||| |||||||||| ||| ||||||||||||| Sbjct 21744428 CTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTT 21744369 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 21744368 GCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 21744316 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 20561867 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 20561925 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 20561926 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 20561985 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 20561986 GTGGTCCCCC 20561995 >seq11 Length=21200727 Score = 104 bits (114), Expect = 6e-20 Identities = 88/107 (82%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | |||||||||| ||| || |||||||||||| |||||||||||| | Sbjct 9944994 ACGGTTTCACGTTCTATTTCACGACCCACTA-GGGGTTCTTTTCACCTTTCCCTCACCAT 9945052 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||| || |||||||||| ||| |||||||||||||| | | ||| Sbjct 9945053 ACTACATCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGG 9945099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241479713792