Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq4 118 9e-25 seq2 118 9e-25 seq10 100 2e-19 seq8 100 2e-19 seq3 100 2e-19 seq4336 87.8 1e-15 seq6 86.0 5e-15 seq9 75.2 9e-12 >seq4 Length=32292456 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 29375825 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 29375767 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 29375766 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 29375707 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 29375706 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 29375667 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 2796885 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 2796944 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 2796945 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 2797004 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 2797005 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 2797039 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 2813880 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 2813821 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 2813820 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 2813761 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 2813760 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 2813726 >seq2 Length=36083738 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 20539815 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 20539757 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 20539756 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 20539697 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 20539696 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 20539657 >seq10 Length=17164355 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 80114 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 80055 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 80054 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 79995 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 79994 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 79960 >seq8 Length=23026653 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 17304737 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 17304678 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 17304677 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 17304618 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 17304617 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 17304583 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 17305875 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 17305816 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 17305815 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 17305756 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 17305755 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 17305721 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 17347182 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 17347241 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 17347242 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 17347301 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 17347302 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 17347336 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 17351228 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 17351287 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 17351288 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 17351347 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 17351348 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 17351382 Score = 87.8 bits (96), Expect = 1e-15 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32 ACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTAT 91 || | || ||| ||||||| |||||||| | | ||| |||| ||| |||||||| Sbjct 17524632 ACCCNTTTTGGAGTTAGCTCACCCTCGCGAGATCGCGACCCTTTGTCCCGCCCATTGTAG 17524691 Query 92 GACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 ||||||| |||| |||||||| ||||| |||||| | |||||| | ||||||||| Sbjct 17524692 CACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGGCCTCATCCTCTCCTTCCTCC 17524751 Query 152 GGTTT 156 || || Sbjct 17524752 GGCTT 17524756 >seq3 Length=46202548 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 13418212 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 13418271 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 13418272 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 13418331 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 13418332 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 13418366 >seq4336 Length=1339 Score = 87.8 bits (96), Expect = 1e-15 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| |||||||| | | ||| |||| ||| |||||||| ||| Sbjct 330 TTTTTGGAGTTAGCTCACCCTCGCGAGATCGCGACCCTTTGTCCCGCCCATTGTAGCACG 271 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| |||||||| ||||| |||||| | |||||| | ||||||||||| | Sbjct 270 TGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGGCCTCATCCTCTCCTTCCTCCGGCT 211 Query 156 T 156 | Sbjct 210 T 210 >seq6 Length=30401905 Score = 86.0 bits (94), Expect = 5e-15 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| | | ||| || ||| | | ||||| || ||| ||||| ||| | | Sbjct 14106596 CGAGTTGCATAGAATAATTCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 14106654 Query 62 GTTGGCGGCCCTCTGTATGTACCAT-TGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || ||| ||| | |||| ||| ||||||| |||| |||||||| |||| Sbjct 14106655 CCTTGCTTCCCATTGTCATTGCCATATGTCGCACGTGTGTGGCCCAGCCCATAAGTGCCA 14106714 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||| ||||||||||||||||||||| || | |||| Sbjct 14106715 TGCGGACTTAACGTCATCCCCACCTTCCTCCAGTATCTCAC 14106755 >seq9 Length=22605696 Score = 75.2 bits (82), Expect = 9e-12 Identities = 92/123 (75%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| |||| ||| | | ||| |||| ||| |||||||| ||| Sbjct 16501378 TTTTTGGAGTTAGCTCACCCTTGCGAGATCGCGACCCTTTGTCCCGCCCATTGTAGCACG 16501437 Query 96 TGTGAAGCCCTACCCATAAGGGC-CATGAGGACTT-GACGTCATCCCCACCTTCCTCCGG 153 |||| |||| |||||||| ||||| ||||| | | |||||| ||||||||||||| Sbjct 16501438 TGTGTCGCCCAGGGCATAAGGGGGCATGATGACTTTGGCCTCATCCTCACCTTCCTCCGG 16501497 Query 154 TTT 156 || Sbjct 16501498 CTT 16501500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415960957360