Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq6 80.6 4e-13 >seq6 Length=30401905 Score = 80.6 bits (88), Expect = 4e-13 Identities = 96/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 102 AAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTT 161 || ||||||| | ||||| || ||| || || ||||||||||| || || || | || Sbjct 3647554 AATGCTTCTT-GAGGAATATCAACGGACCCTACACGCTTCATGCGCTTCTTCCCTTCTTT 3647496 Query 162 TTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTAC 221 ||||||||| |||| ||| || || | | ||||| || ||||| |||||||| || Sbjct 3647495 TTGCTTCTCCAGCAACTTCTTTTTGCGAGTAATATCACCACCATAGCACTTGGCCAGAAC 3647436 Query 222 GTTCTTTCT 230 |||||||| Sbjct 3647435 ATTCTTTCT 3647427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838318775808