Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq9 201 5e-49 seq5 199 2e-48 seq7 154 6e-35 >seq9 Length=18641908 Score = 201 bits (222), Expect = 5e-49 Identities = 218/283 (77%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 9045 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 9104 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 9105 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 9161 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 9162 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 9221 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 9222 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 9281 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 9282 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 9324 Score = 156 bits (172), Expect = 2e-35 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || ||| |||||| | | Sbjct 8660 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCC 8719 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 8720 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 8779 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 8780 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 8833 >seq5 Length=26596109 Score = 199 bits (220), Expect = 2e-48 Identities = 214/278 (77%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466 ||||||||| ||||||||||||| ||||| |||| | ||||||| |||| | |||| Sbjct 320473 CCCGTCTTGAAACACGGACCAAGAAGTCTGACATGTGTGCGAGTCGACGGGTTCTAAAAC 320532 Query 467 CCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGA 525 | | ||| || ||| ||| | || || | || ||| |||||| | |||| Sbjct 320533 TTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCGCGAGT-TGCACCGCTGGCCGA 320591 Query 526 TCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585 ||||| | | || || || |||| |||||| ||||||||||||||||||||||| Sbjct 320592 CACTGATCTTCTGTGAAGGGTTCGAGTTGGAGCATGCCTGTTGGGACCCGAAAGATGGTG 320651 Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 |||||||||||| | ||| ||||||||||||||| |||||||||||||| |||| | | | Sbjct 320652 AACTATGCCTGAGTGGGGCGAAGCCAGAGGAAAC-CTGGTGGAGGCTCGAAGCGATACAG 320710 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| ||||| | |||||||||||||||| Sbjct 320711 ACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 320748 Score = 143 bits (158), Expect = 1e-31 Identities = 135/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || ||| |||||| | Sbjct 297728 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCT 297787 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 297788 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 297847 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 |||| |||||| ||||||||| ||| || | ||||||| | ||||||| Sbjct 297848 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTACCGGGAGGGAAG 297899 >seq7 Length=26849004 Score = 154 bits (170), Expect = 6e-35 Identities = 211/285 (74%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| |||||||||||||||||| |||| | ||||| |||| | Sbjct 7827340 CGACCCGTCTTGAGACACGGACCAAGGAGTCTGACATGCCTACGAGTCGACGGGTTCTGG 7827281 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 |||| | | || || ||| ||| ||| || || || | | ||| ||||| || Sbjct 7827280 AACCTGGGATGCACAAGGAAGCTGAC--GAG-TGAGAGGCCCTCGCGGGCCGCACCGCCG 7827224 Query 521 ACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578 |||| |||||| |||| | | || ||||||| ||||| || | |||||||||| Sbjct 7827223 GCCGACCCTGAT--CTTCTGTAAAGGGTTTGAGTTGGAGCACGCCTATCGGGACCCGAAC 7827166 Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||| ||||| |||||| ||| |||| || |||||||||||||||||||||| ||| Sbjct 7827165 GATGGTCAACTAAGCCTGAGCGGGGCGAAGTCAAAGGAAACTCTGGTGGAGGCTCGAAGC 7827106 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||| |||||||||| ||||| | |||||||||||| ||| Sbjct 7827105 GATACTGACGTGCAAATCATTCGTCTGACTTGGGTATAGGGCCGA 7827061 Score = 140 bits (154), Expect = 1e-30 Identities = 198/273 (73%), Gaps = 9/273 (3%) Strand=Plus/Plus Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCGT 470 ||||| ||||||||||||||||||| |||| |||||||| |||| | ||||| | Sbjct 7826479 TCTTGAAACACGGACCAAGGAGTCTGACATGCATGCGAGTCGACGGGTTTTGAAACCTGG 7826538 Query 471 GCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGC---ACCATCGACCGAT 526 | || || ||| ||| | |||||| || | | | || ||| | || | Sbjct 7826539 GATACGCAAGGAATTTGAC---AAGTGGGAGGCCCTC-GCGAGCCATACCTCTGGCCAAC 7826594 Query 527 CCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 |||||| | | || || || || | ||||| |||| ||||||||||||||||||| Sbjct 7826595 CCTGATCTTCTATGAAGGGTTCGAATTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGA 7826654 Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646 | ||||| ||| ||| |||| ||||||||| |||| |||||||||| |||| | ||| Sbjct 7826655 ATTATGCTTGAGCGGGGCGAAGTCAGAGGAAAATCTGATGGAGGCTCGAAGCGATACTGA 7826714 Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||| ||||||| | ||| | |||||||||||| Sbjct 7826715 CGTACAAATCGTTTGTCTGACTTGGGTATAGGG 7826747 Score = 91.5 bits (100), Expect = 6e-16 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 ||||| |||||||||||| | || ||| |||||| | | || || |||||||| | | Sbjct 7826122 GTTGTCTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAATACAG-CG 7826180 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||||| ||||||| ||||| | || |||||||||||| || ||| ||||||||| Sbjct 7826181 AGAGATCGATAGCAAACAAGCACCACGAGGGAAAGATGAAAATGACATTGAAAAGAGAGT 7826240 Query 167 TAAAAAGCACGTGAAAT 183 ||| || | |||||| Sbjct 7826241 CAAAGAGTGCTTGAAAT 7826257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999742600