Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq9 201 5e-49
seq5 199 2e-48
seq7 154 6e-35
>seq9
Length=18641908
Score = 201 bits (222), Expect = 5e-49
Identities = 218/283 (77%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||||||||| ||||||||||||||||||| |||| ||||||| |||| | |
Sbjct 9045 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 9104
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520
|||| | | ||| || ||| ||| ||| |||| || | | || ||||| |
Sbjct 9105 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 9161
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
|||| |||||| | | || || || |||| ||||| |||| |||||||||||||
Sbjct 9162 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 9221
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 9222 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 9281
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 9282 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 9324
Score = 156 bits (172), Expect = 2e-35
Identities = 139/174 (80%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85
|| || || || |||||||| |||||||||||||||||| | || ||| |||||| | |
Sbjct 8660 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCC 8719
Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145
|| || |||||||| ||| |||||||||||||| ||||||| | || |||||||||
Sbjct 8720 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 8779
Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||| |||||| ||||||||| ||| || | |||||||| | |||||||||
Sbjct 8780 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 8833
>seq5
Length=26596109
Score = 199 bits (220), Expect = 2e-48
Identities = 214/278 (77%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466
||||||||| ||||||||||||| ||||| |||| | ||||||| |||| | ||||
Sbjct 320473 CCCGTCTTGAAACACGGACCAAGAAGTCTGACATGTGTGCGAGTCGACGGGTTCTAAAAC 320532
Query 467 CCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGA 525
| | ||| || ||| ||| | || || | || ||| |||||| | ||||
Sbjct 320533 TTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCGCGAGT-TGCACCGCTGGCCGA 320591
Query 526 TCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTG 585
||||| | | || || || |||| |||||| |||||||||||||||||||||||
Sbjct 320592 CACTGATCTTCTGTGAAGGGTTCGAGTTGGAGCATGCCTGTTGGGACCCGAAAGATGGTG 320651
Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645
|||||||||||| | ||| ||||||||||||||| |||||||||||||| |||| | | |
Sbjct 320652 AACTATGCCTGAGTGGGGCGAAGCCAGAGGAAAC-CTGGTGGAGGCTCGAAGCGATACAG 320710
Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||||||| ||||| | ||||||||||||||||
Sbjct 320711 ACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 320748
Score = 143 bits (158), Expect = 1e-31
Identities = 135/172 (78%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85
|| || || || |||||||| |||||||||||||||||| | || ||| |||||| |
Sbjct 297728 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAACTCT 297787
Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145
|| || |||||||| ||| |||||||||||||| ||||||| | || |||||||||
Sbjct 297788 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 297847
Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197
|||| |||||| ||||||||| ||| || | ||||||| | |||||||
Sbjct 297848 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTACCGGGAGGGAAG 297899
>seq7
Length=26849004
Score = 154 bits (170), Expect = 6e-35
Identities = 211/285 (74%), Gaps = 11/285 (4%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||||||||| |||||||||||||||||| |||| | ||||| |||| |
Sbjct 7827340 CGACCCGTCTTGAGACACGGACCAAGGAGTCTGACATGCCTACGAGTCGACGGGTTCTGG 7827281
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520
|||| | | || || ||| ||| ||| || || || | | ||| ||||| ||
Sbjct 7827280 AACCTGGGATGCACAAGGAAGCTGAC--GAG-TGAGAGGCCCTCGCGGGCCGCACCGCCG 7827224
Query 521 ACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578
|||| |||||| |||| | | || ||||||| ||||| || | ||||||||||
Sbjct 7827223 GCCGACCCTGAT--CTTCTGTAAAGGGTTTGAGTTGGAGCACGCCTATCGGGACCCGAAC 7827166
Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638
|||||| ||||| |||||| ||| |||| || |||||||||||||||||||||| |||
Sbjct 7827165 GATGGTCAACTAAGCCTGAGCGGGGCGAAGTCAAAGGAAACTCTGGTGGAGGCTCGAAGC 7827106
Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| | ||| |||||||||| ||||| | |||||||||||| |||
Sbjct 7827105 GATACTGACGTGCAAATCATTCGTCTGACTTGGGTATAGGGCCGA 7827061
Score = 140 bits (154), Expect = 1e-30
Identities = 198/273 (73%), Gaps = 9/273 (3%)
Strand=Plus/Plus
Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCGT 470
||||| ||||||||||||||||||| |||| |||||||| |||| | ||||| |
Sbjct 7826479 TCTTGAAACACGGACCAAGGAGTCTGACATGCATGCGAGTCGACGGGTTTTGAAACCTGG 7826538
Query 471 GCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGC---ACCATCGACCGAT 526
| || || ||| ||| | |||||| || | | | || ||| | || |
Sbjct 7826539 GATACGCAAGGAATTTGAC---AAGTGGGAGGCCCTC-GCGAGCCATACCTCTGGCCAAC 7826594
Query 527 CCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586
|||||| | | || || || || | ||||| |||| |||||||||||||||||||
Sbjct 7826595 CCTGATCTTCTATGAAGGGTTCGAATTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGA 7826654
Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646
| ||||| ||| ||| |||| ||||||||| |||| |||||||||| |||| | |||
Sbjct 7826655 ATTATGCTTGAGCGGGGCGAAGTCAGAGGAAAATCTGATGGAGGCTCGAAGCGATACTGA 7826714
Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
||| ||||||| | ||| | ||||||||||||
Sbjct 7826715 CGTACAAATCGTTTGTCTGACTTGGGTATAGGG 7826747
Score = 91.5 bits (100), Expect = 6e-16
Identities = 103/137 (75%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106
||||| |||||||||||| | || ||| |||||| | | || || |||||||| | |
Sbjct 7826122 GTTGTCTGGGAATGCAGCCCAAATCGGGCGGTAAACTCCGTCCAAGGCTAAATACAG-CG 7826180
Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166
||||| ||||||| ||||| | || |||||||||||| || ||| |||||||||
Sbjct 7826181 AGAGATCGATAGCAAACAAGCACCACGAGGGAAAGATGAAAATGACATTGAAAAGAGAGT 7826240
Query 167 TAAAAAGCACGTGAAAT 183
||| || | ||||||
Sbjct 7826241 CAAAGAGTGCTTGAAAT 7826257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079999742600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |