Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq8 250 6e-64
seq1 224 2e-56
seq6 87.8 5e-15
>seq8
Length=21838022
Score = 250 bits (276), Expect = 6e-64
Identities = 280/378 (74%), Gaps = 26/378 (7%)
Strand=Plus/Minus
Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112
||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 19547054 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 19546995
Query 113 TCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT 172
||||||||||||||||||||| ||||||||||||||| |||||||||||| || |||
Sbjct 19546994 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCT 19546935
Query 173 TC----GCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCT 228
|| | | || | ||| | || |||||||||||| |||||||||||| |||
Sbjct 19546934 TCCCTGTCATCAGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCC 19546875
Query 229 ATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTG 288
|||| | ||| || ||||| ||| |||||||||| ||||||||||| ||||||
Sbjct 19546874 ATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTG 19546815
Query 289 GTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCT 348
|| || ||||| | | || ||| ||| | ||||||
Sbjct 19546814 GTCACTGCGACCCCCTTTTGC-----GAG-----------------GGGGCACCCCTTCT 19546777
Query 349 CCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGG 408
||||||||||||| || ||||||| |||||||| ||||| |||| || ||| ||
Sbjct 19546776 CCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGG 19546717
Query 409 TATTCTCTACCCAACCAC 426
||||||||||| | ||||
Sbjct 19546716 TATTCTCTACCTACCCAC 19546699
Score = 190 bits (210), Expect = 5e-46
Identities = 134/153 (88%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||||||| ||||||| ||| ||||||
Sbjct 19547220 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 19547161
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19547160 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 19547101
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165
| ||||||||||||||| |||||||||||| ||
Sbjct 19547100 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTC 19547068
>seq1
Length=41795227
Score = 224 bits (248), Expect = 2e-56
Identities = 221/286 (77%), Gaps = 6/286 (2%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 10686615 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 10686556
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 10686555 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 10686496
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||||||| || | ||| ||| | ||
Sbjct 10686495 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 10686442
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | ||||||| |||||||||||| |||| || |||||| || || | |
Sbjct 10686441 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 10686382
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292
| ||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 10686381 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTAT 10686336
Score = 73.4 bits (80), Expect = 1e-10
Identities = 63/77 (82%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGC 401
||||||||||||||||||| | | ||||||| ||||||||| | |||||||| | ||
Sbjct 10686204 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGC 10686145
Query 402 GCCTTGGTATTCTCTAC 418
||| | |||| ||||||
Sbjct 10686144 GCCCTAGTATACTCTAC 10686128
>seq6
Length=31808207
Score = 87.8 bits (96), Expect = 5e-15
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112
|||| || ||| |||||||| || || ||| |||| |||||||||||||||||||||
Sbjct 18803427 GAGATAGAGCCCAAATCGTTACACCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATT 18803368
Query 113 TCGCTACCTTAGGACC 128
||||||||||||||||
Sbjct 18803367 TCGCTACCTTAGGACC 18803352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260799848704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |