Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq8 250 6e-64 seq1 224 2e-56 seq6 87.8 5e-15 >seq8 Length=21838022 Score = 250 bits (276), Expect = 6e-64 Identities = 280/378 (74%), Gaps = 26/378 (7%) Strand=Plus/Minus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 19547054 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 19546995 Query 113 TCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT 172 ||||||||||||||||||||| ||||||||||||||| |||||||||||| || ||| Sbjct 19546994 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCT 19546935 Query 173 TC----GCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCT 228 || | | || | ||| | || |||||||||||| |||||||||||| ||| Sbjct 19546934 TCCCTGTCATCAGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCC 19546875 Query 229 ATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTG 288 |||| | ||| || ||||| ||| |||||||||| ||||||||||| |||||| Sbjct 19546874 ATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTG 19546815 Query 289 GTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCT 348 || || ||||| | | || ||| ||| | |||||| Sbjct 19546814 GTCACTGCGACCCCCTTTTGC-----GAG-----------------GGGGCACCCCTTCT 19546777 Query 349 CCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGG 408 ||||||||||||| || ||||||| |||||||| ||||| |||| || ||| || Sbjct 19546776 CCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGG 19546717 Query 409 TATTCTCTACCCAACCAC 426 ||||||||||| | |||| Sbjct 19546716 TATTCTCTACCTACCCAC 19546699 Score = 190 bits (210), Expect = 5e-46 Identities = 134/153 (88%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 19547220 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 19547161 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19547160 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 19547101 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 | ||||||||||||||| |||||||||||| || Sbjct 19547100 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTC 19547068 >seq1 Length=41795227 Score = 224 bits (248), Expect = 2e-56 Identities = 221/286 (77%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 10686615 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 10686556 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 10686555 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 10686496 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||| ||| | || Sbjct 10686495 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 10686442 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 10686441 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 10686382 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 | ||||||| ||||||||||||||||||||||| | |||||||| Sbjct 10686381 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTAT 10686336 Score = 73.4 bits (80), Expect = 1e-10 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGC 401 ||||||||||||||||||| | | ||||||| ||||||||| | |||||||| | || Sbjct 10686204 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGC 10686145 Query 402 GCCTTGGTATTCTCTAC 418 ||| | |||| |||||| Sbjct 10686144 GCCCTAGTATACTCTAC 10686128 >seq6 Length=31808207 Score = 87.8 bits (96), Expect = 5e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 |||| || ||| |||||||| || || ||| |||| ||||||||||||||||||||| Sbjct 18803427 GAGATAGAGCCCAAATCGTTACACCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATT 18803368 Query 113 TCGCTACCTTAGGACC 128 |||||||||||||||| Sbjct 18803367 TCGCTACCTTAGGACC 18803352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260799848704