Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq8 318 1e-84 seq1 268 2e-69 seq6 111 3e-22 seq4 84.2 5e-14 >seq8 Length=21838022 Score = 318 bits (352), Expect = 1e-84 Identities = 260/313 (83%), Gaps = 7/313 (2%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19547054 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 19546995 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 ||||||||||||||||||||||||||||||||||||| || ||||||| || | ||| Sbjct 19546994 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCT 19546935 Query 167 TCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCT 222 || | | || | || | |||| ||||||| |||| |||||||||||||| || Sbjct 19546934 TCCCTGTCATCAGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCC 19546875 Query 223 ATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTA 282 |||||| ||||| |||||| || || ||||||||||||||||||||||||| |||||| Sbjct 19546874 ATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTG 19546815 Query 283 TTCTCTGCGGCCTGTCATAGACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTT 339 || ||||| || | | | ||||||||||||||| ||||||||||| ||||| Sbjct 19546814 GTCACTGCGACCCCCTTTTGCGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTT 19546755 Query 340 GCCGAGTTCCTTA 352 ||||||||||||| Sbjct 19546754 GCCGAGTTCCTTA 19546742 Score = 205 bits (226), Expect = 2e-50 Identities = 134/148 (91%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 19547220 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 19547161 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19547160 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 19547101 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||||||| || ||||||| Sbjct 19547100 TAGTTACGGCCGCCGTTCACCGGGGCTT 19547073 >seq1 Length=41795227 Score = 268 bits (296), Expect = 2e-69 Identities = 277/363 (76%), Gaps = 20/363 (6%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 10686615 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 10686556 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 10686555 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 10686496 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | | || Sbjct 10686495 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 10686444 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 10686443 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 10686384 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 10686383 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 10686324 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 10686323 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 10686264 Query 349 CTT 351 ||| Sbjct 10686263 CTT 10686261 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 10686209 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 10686152 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/83 (81%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 212 CGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTC 271 ||| | |||| |||||| ||||| |||||| || || ||||||||||||||||||||||| Sbjct 20585991 CGTGATCTCC-ATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTC 20586049 Query 272 GCTTGGGCCTATTCTCTGCGGCC 294 | || ||| || ||||| || Sbjct 20586050 GACCGGACCTGGTCACTGCGACC 20586072 >seq6 Length=31808207 Score = 111 bits (122), Expect = 3e-22 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||| || |||||||||||||| ||||| ||| ||||| ||||||||||||||||||||| Sbjct 18803427 GAGATAGAGCCCAAATCGTTACACCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATT 18803368 Query 107 TCGCTACCTTAGGACC 122 |||||||||||||||| Sbjct 18803367 TCGCTACCTTAGGACC 18803352 >seq4 Length=30391017 Score = 84.2 bits (92), Expect = 5e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 23608064 GCATCTTCACAGATATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 23608123 Query 67 ACGCCTTTCGTGCGGG 82 |||||||||||||||| Sbjct 23608124 ACGCCTTTCGTGCGGG 23608139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062399872512