Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq8 416 9e-114 seq1 192 2e-46 seq12 183 9e-44 seq6 140 1e-30 seq2 127 6e-27 seq5 100 9e-19 seq7 82.4 2e-13 >seq8 Length=21838022 Score = 416 bits (460), Expect = 9e-114 Identities = 372/464 (80%), Gaps = 3/464 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 19540419 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 19540478 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 19540479 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 19540538 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | |||| ||| || | ||||||| ||||||| ||||||||| Sbjct 19540539 TTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 19540596 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || |||||||||||||| |||||||||||||||||| | |||||||| Sbjct 19540597 CTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 19540656 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || || | ||| || || || | ||| ||||||| || ||||||||||| | ||| Sbjct 19540657 CACTATGA-GTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGAGAGGAT 19540715 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 || | ||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 19540716 GAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGAC 19540775 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| ||||||| ||| || ||| ||| || |||||||||||||| Sbjct 19540776 AAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 19540835 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 || |||||||||| || ||||||| ||||||||||||||||| Sbjct 19540836 CAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCG 19540879 Score = 104 bits (114), Expect = 7e-20 Identities = 97/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 376 CGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGA 435 ||||||| ||| || ||| ||| || |||||||||||||| || |||||||||| Sbjct 19540900 CGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGC 19540959 Query 436 CTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCC 494 || ||||||| ||||||||||||||||| | |||| ||| | |||||||| |||||| Sbjct 19540960 CTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCC 19541019 Query 495 CG 496 || Sbjct 19541020 CG 19541021 Score = 100 bits (110), Expect = 9e-19 Identities = 87/107 (81%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||| |||| |||| ||| |||| | ||||||||||||||| Sbjct 3985069 CGCAAGAATGAAACTCAAAGGATTTGAAGGGGGCCCACACATACAGTGGAGCATGTGGTT 3985128 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG--ACATCCTC 111 ||||| || |||| | ||||||||||||| |||| ||||| || Sbjct 3985129 TAATTTGATGCAAAGATGAGAACCTTACCAAGACTTGGTACATCATC 3985175 Score = 95.1 bits (104), Expect = 4e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATC 463 || |||||||||||||| || |||||||||| || ||||||| |||||||||||||||| Sbjct 19542017 GTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATC 19542076 Query 464 GTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 | | | || ||| | |||||||| |||||||| Sbjct 19542077 GCCGGTTAGCCATACGGCGGTGAATCCGTTCCCG 19542110 Score = 82.4 bits (90), Expect = 2e-13 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 100 CTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAG 159 |||||||| | ||| ||||| || | ||||| | |||| ||| || | |||| Sbjct 15803289 CTTGACATGCCGTGAATCCTCTTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGATACAG 15803232 Query 160 GTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCA 213 ||| ||||||| ||||||||||||||| ||| || ||||| |||||||| |||| Sbjct 15803231 GTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGTGTTAAGTCTCGCA 15803178 >seq1 Length=41795227 Score = 192 bits (212), Expect = 2e-46 Identities = 187/237 (79%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 10707639 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 10707580 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 10707579 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 10707521 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 10707520 AGCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 10707462 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 10707461 TTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 10707405 Score = 167 bits (184), Expect = 7e-39 Identities = 178/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 10709912 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 10709853 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| Sbjct 10709852 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 10709802 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | ||| ||| || || || | ||||||| ||||||| || Sbjct 10709801 -ACAACAAAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 10709743 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 10709742 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 10709689 >seq12 Length=19964954 Score = 183 bits (202), Expect = 9e-44 Identities = 185/237 (78%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||| ||||||| |||||||| || |||| |||||||| Sbjct 15743464 GACTGCCAGTGAGATACTGGAGGAATGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 15743405 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| | |||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 15743404 GGCTGGGCCATACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 15743346 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||||| || ||| ||||||||||||||| ||||||||||| | |||||| Sbjct 15743345 AGCGAATCCGGAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 15743287 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 15743286 TTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 15743230 >seq6 Length=31808207 Score = 140 bits (154), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || |||| |||| | || ||||||||||||||| |||||||| || |||| | |||||| Sbjct 13433090 GATTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCACTTATG 13433149 Query 327 ATTTGGGCTACACACGTGCTACA-ATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTC 384 ||||| |||||||||| ||| |||| |||| |||| ||| ||| | | | ||| Sbjct 13433150 GGCTGGGCCACACACGTGCGACATATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCG 13433208 Query 385 AAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444 ||||||| || |||| | ||||||||| ||| | | ||||||||| | ||||| Sbjct 13433209 GAGCAAAT-CCGGAAAGATTGCCTCAGTTCGAATTATTCTATGCAACTCGGGAACATGAA 13433267 Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 | || ||| |||||||||| ||||| ||||| |||||||| || || Sbjct 13433268 GTTGAAATTGCTAGTAATCTCGGATCAACATGCCGTGGTGAATATGTACC 13433317 Score = 84.2 bits (92), Expect = 7e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCC 209 ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 27345099 ACAGGTGCTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCC 27345152 >seq2 Length=37273066 Score = 127 bits (140), Expect = 6e-27 Identities = 117/147 (80%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||||||| ||||||| ||||||| || |||||| ||||||| |||||| Sbjct 12973402 ACAGGTGGTGCATGGTTGTTGTCAGCTTGTGTCGTAAGGTGTTGGTTTAAGTCTCGCAAC 12973461 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 |||||||||||| | |||||||||| | | |||| || || | | ||||||||| Sbjct 12973462 GAGCGCAACCCTCGTGTTTAGTTGCCA-CTATGAGTTTGGAACCTTGAACAGACTGCCGG 12973520 Query 276 TGACAAACCGGAGGAAGGTGGGGACGA 302 || || | ||||||||| | ||| || Sbjct 12973521 TGTTAAGCTGGAGGAAGGAGAGGATGA 12973547 >seq5 Length=26596109 Score = 100 bits (110), Expect = 9e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||| ||||||| ||| || |||||||||||||| |||||| Sbjct 24434957 ACAGGTGGTGCATGGCTGTCGTCCGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAAC 24435016 Query 216 GAGCGCAACCCTTAAGCTTAGTT 238 |||||||||||| | |||||| Sbjct 24435017 GAGCGCAACCCTCGTGTTTAGTT 24435039 >seq7 Length=26849004 Score = 82.4 bits (90), Expect = 2e-13 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 345 CTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTG 404 ||||||||| | ||||||| |||| || |||| ||| || ||| ||| || Sbjct 19357470 CTACAATGGGCGGGACAAAGGATCGCGATCTCGTGAGGGTGAGCTAACTCCAAAAATCTG 19357529 Query 405 TTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 | ||| ||||||||||||| ||||||||| | |||||| |||||||||||||||| Sbjct 19357530 TCCTCGGTTCGGATTGTAGGTTGCAACTCGTTTGCATGAAGTAGGAATCGCTAGTAATCA 19357589 Query 465 TAGATCAG-CATGCTACGGTGAATACGTTC 493 | | || ||| | ||||||| ||||| Sbjct 19357590 CCGGTTAGCCATACGGTGGTGAATCCGTTC 19357619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503999819520