Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq9 412 6e-113 seq7 331 2e-88 seq8 241 2e-61 >seq9 Length=18641908 Score = 412 bits (456), Expect = 6e-113 Identities = 268/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| |||||||||||||||||||||||||||||||||| Sbjct 11553 TACTAGGTTGAATTACTATCGCGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 11495 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 11494 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 11435 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11434 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 11375 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 11374 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 11315 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 11314 CAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 11262 >seq7 Length=26849004 Score = 331 bits (366), Expect = 2e-88 Identities = 250/293 (85%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| | ||||||| ||||||||||||| ||||||| Sbjct 7872783 TACTAGGTTGAATTACTATCGCGGC-AGAGTCATCACAAGGGTAAAACTAAAATGTCTCA 7872725 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||| |||| |||||||||||||||||||||||||||||||||||| ||| || Sbjct 7872724 CGACGGTCTTAACCTAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGTGA 7872665 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||| | Sbjct 7872664 ATTCTGCTTCACAATGATAGGAAGAGCCAACATCGAAGGATAAAAAAGCAATGTCGCTTT 7872605 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| |||||||||||||||||||||| ||| |||||||||||||| | ||||| |||| | Sbjct 7872604 GAATGCTTGGCTGCCACAAGCCAGTTTTCCTTGTGGTAACTTTTCGGACACCTGTAGCTT 7872545 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || | ||| || ||||||||||||||||||| |||||| |||| |||||| Sbjct 7872544 CTAACTCCGAAGGTCTAAAGGATCGATAGGCCATGCTTTCACGGTTCGTATTC 7872492 >seq8 Length=21838022 Score = 241 bits (266), Expect = 2e-61 Identities = 159/175 (91%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 12 ATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAA 71 ||||| || | ||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 13667391 ATTACTATCGCGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAA 13667333 Query 72 ACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCG 131 ||| ||||||| ||||||||||||||||||| |||||||| |||| ||||| |||||| Sbjct 13667332 ACCTAGCTCACATTCCCTATTAGTGGGTGAAAAATCCAACACTTAGTGAATTATGCTTCA 13667273 Query 132 GTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 13667272 CAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAGCGC 13667218 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || |||| |||| ||||| ||||| Sbjct 19547907 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 19547848 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | ||| | | | |||||||||||||||| | |||| Sbjct 19547847 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 19547791 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | |||| ||||||||| ||||||||| Sbjct 19547790 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 19547736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399897472