Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq8 241 5e-61
seq2 123 9e-26
seq11 114 5e-23
seq1 111 6e-22
seq4 105 2e-20
>seq8
Length=21838022
Score = 241 bits (266), Expect = 5e-61
Identities = 343/476 (72%), Gaps = 30/476 (6%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 19545465 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 19545406
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | ||
Sbjct 19545405 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 19545346
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| | || |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 19545345 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 19545286
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367
|| | |||||||| |||||||||||||||||||| | || | |
Sbjct 19545285 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCGTTC-CCT 19545231
Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426
||||| || ||| | | | |||| |||||||||||||| |||||||| ||||
Sbjct 19545230 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GA 19545174
Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACTA 483
| | || ||| |||| || | ||| || || ||||||| || |||
Sbjct 19545173 GATCACT---------TTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTA 19545123
Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543
||||||| ||| | ||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct 19545122 TTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGT 19545063
Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|||| |||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 19545062 CACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 19545007
>seq2
Length=37273066
Score = 123 bits (136), Expect = 9e-26
Identities = 107/132 (81%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505
|| |||| |||||| ||| | | |||||| || ||| ||||||||| ||||| |
Sbjct 5149705 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGTTC 5149646
Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565
||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||
Sbjct 5149645 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 5149586
Query 566 ACGGGTGGTCCC 577
||||||||||
Sbjct 5149585 GAGGGTGGTCCC 5149574
>seq11
Length=24454635
Score = 114 bits (126), Expect = 5e-23
Identities = 84/98 (86%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526
|| ||||||| || |||||||||| ||| | |||||| ||||||||||||||||||| ||
Sbjct 11218553 CACGGTTTCATGTTCTATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCACCGT 11218494
Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564
||| |||||||||||||| |||||||||||| |||
Sbjct 11218493 ACTACATCGCTATCGGTCACCTAGGAGTATTTAGCCTT 11218456
Score = 104 bits (114), Expect = 8e-20
Identities = 75/87 (86%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550
||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 19459715 CCCCGATTGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAG 19459656
Query 551 GAGTATTTAGGCTTAACGGGTGGTCCC 577
|| || ||||||||| ||||||||||
Sbjct 19459655 GAATACTTAGGCTTAGAGGGTGGTCCC 19459629
>seq1
Length=41795227
Score = 111 bits (122), Expect = 6e-22
Identities = 137/186 (74%), Gaps = 1/186 (1%)
Strand=Plus/Minus
Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165
||||||||||||| || | ||| ||||| || |||| |||||| ||| |||
Sbjct 24751384 AGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGTGGAAAAC 24751325
Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225
||||||| | | ||| |||| |||||||||||| ||||| ||||||||| | |||
Sbjct 24751324 CAGCTATATCTGATCTTGGTTGGTCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTG 24751265
Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGA 284
| | || ||||||||| ||||||| | | ||| | | ||||||||||| |||||
Sbjct 24751264 CCGCATACGTGGGTTCGTTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGC 24751205
Query 285 TAGATC 290
||||||
Sbjct 24751204 TAGATC 24751199
Score = 111 bits (122), Expect = 6e-22
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || ||||| |||||||||||||||| | | ||| || |||| ||||||
Sbjct 32616391 GCTGCGCCTCAACGCATTCCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 32616450
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||| | ||||| |||||| || | | |||||| | ||| |||| || |||| | ||
Sbjct 32616451 CCCAAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTTGGACCTCTGCTTAGT 32616510
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292
| | || |||||| |||| ||||||||||||||
Sbjct 32616511 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCAC 32616546
Score = 107 bits (118), Expect = 7e-21
Identities = 143/197 (73%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCT---TGTGGGCC-CCCTAGACCATCCAGTGCT 111
||||||||||| | | || | |||| || ||||| |||||| |||| |||| |
Sbjct 2495737 ATTCGGAGTTTACTAGGGTTGGTAAAGCGAAATGGGGGCCACCCTAGCCCATTGAGTGTT 2495678
Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171
||||||| || | ||| | ||| || |||| |||||| ||| |||||||||
Sbjct 2495677 CTACCTCGGGCCATCGACATCATATGCTCTACTGAAATAAATTTCGCGGAAAACCAGCTA 2495618
Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231
| | | ||| ||||||||||||||||| ||||| ||||| ||| | ||| | || |
Sbjct 2495617 TATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATTCCCGTATTTTGCCACAT 2495558
Query 232 AAGTGGGTTCGGTCCTC 248
| |||||||||||||||
Sbjct 2495557 ACGTGGGTTCGGTCCTC 2495541
>seq4
Length=30391017
Score = 105 bits (116), Expect = 2e-20
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || ||||||||||||||||||| || | | ||| || || | ||||||
Sbjct 10749221 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGTTAGCTCTGGGTTCGAGTGCCATTTCAC 10749162
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | ||
Sbjct 10749161 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 10749102
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289
| | || |||||| |||| |||||||| ||
Sbjct 10749101 TTCATCCAAGCTTCATCCTGGTCATGGATANAT 10749069
Score = 89.7 bits (98), Expect = 2e-15
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525
||| ||||||| || |||||||||| ||| | ||||| |||||||||||||||||| ||
Sbjct 20390703 ACACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCATGG 20390762
Query 526 TACTTGTCCGCTATCGGTCACC 547
|||| | ||||||| ||||||
Sbjct 20390763 TACTACTTCGCTATCAGTCACC 20390784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817599781888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |