Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq8 241 5e-61 seq2 123 9e-26 seq11 114 5e-23 seq1 111 6e-22 seq4 105 2e-20 >seq8 Length=21838022 Score = 241 bits (266), Expect = 5e-61 Identities = 343/476 (72%), Gaps = 30/476 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 19545465 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 19545406 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 19545405 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 19545346 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 19545345 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 19545286 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 || | |||||||| |||||||||||||||||||| | || | | Sbjct 19545285 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCGTTC-CCT 19545231 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 19545230 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GA 19545174 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACTA 483 | | || ||| |||| || | ||| || || ||||||| || ||| Sbjct 19545173 GATCACT---------TTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTA 19545123 Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 ||||||| ||| | ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 19545122 TTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGT 19545063 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 19545062 CACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 19545007 >seq2 Length=37273066 Score = 123 bits (136), Expect = 9e-26 Identities = 107/132 (81%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||||| ||||| | Sbjct 5149705 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATTGGGGTTC 5149646 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 5149645 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 5149586 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 5149585 GAGGGTGGTCCC 5149574 >seq11 Length=24454635 Score = 114 bits (126), Expect = 5e-23 Identities = 84/98 (86%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || ||||||| || |||||||||| ||| | |||||| ||||||||||||||||||| || Sbjct 11218553 CACGGTTTCATGTTCTATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCACCGT 11218494 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 ||| |||||||||||||| |||||||||||| ||| Sbjct 11218493 ACTACATCGCTATCGGTCACCTAGGAGTATTTAGCCTT 11218456 Score = 104 bits (114), Expect = 8e-20 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 ||||| ||||| |||||||||||||||||||||||||||| |||||||||||| || Sbjct 19459715 CCCCGATTGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAG 19459656 Query 551 GAGTATTTAGGCTTAACGGGTGGTCCC 577 || || ||||||||| |||||||||| Sbjct 19459655 GAATACTTAGGCTTAGAGGGTGGTCCC 19459629 >seq1 Length=41795227 Score = 111 bits (122), Expect = 6e-22 Identities = 137/186 (74%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||||||||||| || | ||| ||||| || |||| |||||| ||| ||| Sbjct 24751384 AGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGTGGAAAAC 24751325 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 ||||||| | | ||| |||| |||||||||||| ||||| ||||||||| | ||| Sbjct 24751324 CAGCTATATCTGATCTTGGTTGGTCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTG 24751265 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGA 284 | | || ||||||||| ||||||| | | ||| | | ||||||||||| ||||| Sbjct 24751264 CCGCATACGTGGGTTCGTTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGC 24751205 Query 285 TAGATC 290 |||||| Sbjct 24751204 TAGATC 24751199 Score = 111 bits (122), Expect = 6e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||| |||||||||||||||| | | ||| || |||| |||||| Sbjct 32616391 GCTGCGCCTCAACGCATTCCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 32616450 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||| | ||||| |||||| || | | |||||| | ||| |||| || |||| | || Sbjct 32616451 CCCAAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTTGGACCTCTGCTTAGT 32616510 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 | | || |||||| |||| |||||||||||||| Sbjct 32616511 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCAC 32616546 Score = 107 bits (118), Expect = 7e-21 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCT---TGTGGGCC-CCCTAGACCATCCAGTGCT 111 ||||||||||| | | || | |||| || ||||| |||||| |||| |||| | Sbjct 2495737 ATTCGGAGTTTACTAGGGTTGGTAAAGCGAAATGGGGGCCACCCTAGCCCATTGAGTGTT 2495678 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||||| || | ||| | ||| || |||| |||||| ||| ||||||||| Sbjct 2495677 CTACCTCGGGCCATCGACATCATATGCTCTACTGAAATAAATTTCGCGGAAAACCAGCTA 2495618 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | | ||| ||||||||||||||||| ||||| ||||| ||| | ||| | || | Sbjct 2495617 TATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATTCCCGTATTTTGCCACAT 2495558 Query 232 AAGTGGGTTCGGTCCTC 248 | ||||||||||||||| Sbjct 2495557 ACGTGGGTTCGGTCCTC 2495541 >seq4 Length=30391017 Score = 105 bits (116), Expect = 2e-20 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||||||||||||||| || | | ||| || || | |||||| Sbjct 10749221 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGTTAGCTCTGGGTTCGAGTGCCATTTCAC 10749162 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 10749161 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 10749102 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 | | || |||||| |||| |||||||| || Sbjct 10749101 TTCATCCAAGCTTCATCCTGGTCATGGATANAT 10749069 Score = 89.7 bits (98), Expect = 2e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 ||| ||||||| || |||||||||| ||| | ||||| |||||||||||||||||| || Sbjct 20390703 ACACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCATGG 20390762 Query 526 TACTTGTCCGCTATCGGTCACC 547 |||| | ||||||| |||||| Sbjct 20390763 TACTACTTCGCTATCAGTCACC 20390784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817599781888