Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq8 199 1e-48
seq2 111 4e-22
seq11 109 1e-21
seq4 89.7 1e-15
>seq8
Length=21838022
Score = 199 bits (220), Expect = 1e-48
Identities = 306/421 (73%), Gaps = 19/421 (5%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| |
Sbjct 19545399 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 19545343
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
| |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 19545342 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 19545287
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182
||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| |
Sbjct 19545286 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 19545229
Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242
| ||||||| || |||||| | | |||| | ||| ||| |||| |||| | ||
Sbjct 19545228 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 19545169
Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299
| ||||||||||||| || | |||||||| | ||||||||||| ||| ||
Sbjct 19545168 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 19545109
Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359
|||||||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||
Sbjct 19545108 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 19545050
Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
||||||||| | | |||||| | ||||| || || | ||||| || | ||||||
Sbjct 19545049 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 19544990
Query 420 G 420
|
Sbjct 19544989 G 19544989
>seq2
Length=37273066
Score = 111 bits (122), Expect = 4e-22
Identities = 104/130 (80%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| |||||||| | |||||||||||
Sbjct 5149700 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 5149642
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 5149641 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 5149582
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 5149581 GTGGTCCCCC 5149572
>seq11
Length=24454635
Score = 109 bits (120), Expect = 1e-21
Identities = 89/107 (83%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
||||||||| | ||||||||||| ||| || |||||||||||| |||||||||||| ||
Sbjct 11218552 ACGGTTTCATGTTCTATTTCACTACCCACTA-GGGGTTCTTTTCACCTTTCCCTCACCGT 11218494
Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376
|||| || |||||||||| || |||||||||||||| | | |||
Sbjct 11218493 ACTACATCGCTATCGGTCACCTAGGAGTATTTAGCCTTGCAAGGTGG 11218447
Score = 93.3 bits (102), Expect = 1e-16
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361
|||||||||||| |||||||||||||||||| || | |||||||||| | || | || ||
Sbjct 19459707 GGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTT 19459648
Query 362 AGCCTTGGAGGATGGTCCCCC 382
|| ||| |||| |||||||||
Sbjct 19459647 AGGCTTAGAGGGTGGTCCCCC 19459627
>seq4
Length=30391017
Score = 89.7 bits (98), Expect = 1e-15
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
||||||||| | ||||||||||| ||| || |||||||||||| ||||||||||| |||
Sbjct 20390705 ACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTCACCTTTCCCTCATGGT 20390763
Query 330 ACTAGTTCACTATCGGTCA 348
|||| ||| ||||| ||||
Sbjct 20390764 ACTACTTCGCTATCAGTCA 20390782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241599851008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |