Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq8 208 2e-51 seq10 156 1e-35 seq5 136 9e-30 seq1 127 5e-27 seq2 91.5 3e-16 >seq8 Length=21838022 Score = 208 bits (230), Expect = 2e-51 Identities = 298/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 19546090 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 19546031 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 19546030 GAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 19545971 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || ||| | | | | ||| ||||| || || | | Sbjct 19545970 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGGTTGCTTC-CCTCTAAGGC 19545915 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 19545914 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 19545859 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| || |||| | || || ||||||||||||||||||||||| ||| Sbjct 19545858 CCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAG 19545800 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||| Sbjct 19545799 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTG 19545740 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 19545739 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 19545691 >seq10 Length=17741381 Score = 156 bits (172), Expect = 1e-35 Identities = 150/191 (79%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||| ||| Sbjct 4035665 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACTAGT 4035609 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 4035608 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 4035549 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 4035548 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 4035489 Query 389 GTTTCCCTCTC 399 ||||||||||| Sbjct 4035488 GTTTCCCTCTC 4035478 >seq5 Length=26596109 Score = 136 bits (150), Expect = 9e-30 Identities = 136/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 229 AAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTACGCACTCT 285 |||||| | ||||| |||| || ||| || ||||||||||||||||||| ||| Sbjct 23807223 AAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGTGAGCTATTACGCTTTCT 23807167 Query 286 TTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC 345 | ||||||||||||||||||||| ||||||| |||||| || ||| |||||| Sbjct 23807166 TCAAAGGATGGCTGCTTCCAAGCCCACCTCCTAGTTGTCATTGCTCGATCACTTCCTTTT 23807107 Query 346 CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| ||| | ||||||| ||||||| | |||||||| ||||||||||||| Sbjct 23807106 CCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGTTGTTTCCCTCTCG 23807052 >seq1 Length=41795227 Score = 127 bits (140), Expect = 5e-27 Identities = 144/192 (75%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||| | | || |||| ||||| ||||| |||| || ||| || ||||||| Sbjct 7405616 GCTTCAGTGAATCACTTGAGCCCTAAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 7405672 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||||| |||| ||||||||||||||||||||| |||| ||||||||| || Sbjct 7405673 GAGCTATTACGTTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTACTGGTTGTCATCG 7405732 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| | |||| ||||| ||| | ||||||| ||||||| | ||||| || | Sbjct 7405733 CTCGATCACTTTCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTAGGTT 7405792 Query 389 GTTTCCCTCTCG 400 ||||| |||||| Sbjct 7405793 GTTTCGCTCTCG 7405804 Score = 114 bits (126), Expect = 3e-23 Identities = 93/112 (83%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 287 TCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCC 346 |||||| ||||||||| | || |||||||||||||||| ||| | |||| |||||| Sbjct 32616129 TCAAGG--GGCTGCTTCTAGGCAAACCTCCTGGTTGTCTTTGCACCCCCACCTCCTTTAT 32616186 Query 347 CACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 ||||||| || |||||||||||||||| ||||| ||||||||||||||| Sbjct 32616187 CACTGAGCGGTCATTTAGGGGCCTTAGCTGCTGATCCGGGCTGTTTCCCTCT 32616238 >seq2 Length=37273066 Score = 91.5 bits (100), Expect = 3e-16 Identities = 185/264 (70%), Gaps = 18/264 (7%) Strand=Plus/Plus Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| | Sbjct 14511732 GGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCGAC 14511791 Query 122 ATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG- 178 ||||||||| ||| || || ||| | | | | | | ||||| || || | || Sbjct 14511792 ATTCTCACTTCCGCTTCG--TCGACCCC-CGCTTTCGCAGTTGCTTC-CCTCTAAGGCGG 14511847 Query 179 -ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | || ||| | |||||||||| || ||| |||| ||| Sbjct 14511848 AACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCAGCAGATCGCTTA-GCC 14511903 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| || |||| | || || ||||||||||||||||||||||| |||| Sbjct 14511904 CCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAGGG 14511962 Query 294 TGGCTGCTTCCAAGCCAACCTCCT 317 |||||||||| | || |||||||| Sbjct 14511963 TGGCTGCTTCTAGGCAAACCTCCT 14511986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177599858688