Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq1 118 9e-25
seq12 109 5e-22
seq8 100 2e-19
seq6 89.7 4e-16
>seq1
Length=41795227
Score = 118 bits (130), Expect = 9e-25
Identities = 123/160 (77%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 10707473 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 10707531
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| ||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 10707532 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 10707591
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 10707592 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 10707631
>seq12
Length=19964954
Score = 109 bits (120), Expect = 5e-22
Identities = 121/160 (76%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 15743298 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 15743356
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| ||| | |||||||| |||||| |||| ||||||||||||||
Sbjct 15743357 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTATGGCCCAGCCCATAAGGGCCAT 15743416
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||| ||||||| || | ||||
Sbjct 15743417 GCGGACTTGACGTCATCCCCACATTCCTCCAGTATCTCAC 15743456
>seq8
Length=21838022
Score = 100 bits (110), Expect = 2e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||
Sbjct 19540849 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 19540790
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 19540789 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 19540730
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|| |||||| | |||||| | ||||||||||| ||
Sbjct 19540729 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 19540695
>seq6
Length=31808207
Score = 89.7 bits (98), Expect = 4e-16
Identities = 118/161 (73%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||| | | ||| || ||| | | ||||| || ||| ||||| ||| | |
Sbjct 13433257 CGAGTTGCATAGAATAATTCGAACTGAGGCAATCTTTCCGG-ATTTGCTCCGCCTTACAG 13433199
Query 62 GTTGGCGGCCCTCTGTATGTACCAT-TGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| || ||| ||| | |||| ||| ||||||| |||| |||||||| ||||
Sbjct 13433198 CCTTGCTTCCCATTGTCATTGCCATATGTCGCACGTGTGTGGCCCAGCCCATAAGTGCCA 13433139
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| |||||||||||||||||||||||||||| || | ||||
Sbjct 13433138 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 13433098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415999951640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |