Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq8 158 2e-36 seq11 114 2e-23 seq4 107 3e-21 seq2 80.6 4e-13 >seq8 Length=21838022 Score = 158 bits (174), Expect = 2e-36 Identities = 206/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 19540297 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 19540238 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || | ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 19540237 CCGATCTCAATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 19540178 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 19540177 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 19540118 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 19540117 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 19540058 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 19540057 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 19540013 >seq11 Length=24454635 Score = 114 bits (126), Expect = 2e-23 Identities = 175/249 (70%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 |||||||| ||| |||||| |||| ||||||| |||||||| ||||||||| |||||| Sbjct 17297581 GCCTTCGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCC 17297522 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCC 160 | ||| | |||||||| || ||||| | ||| || | ||| Sbjct 17297521 ACTCTCCTGTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGA 17297462 Query 161 CATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCG 220 | |||||| | || | | |||||||| |||||||| || | | | |||| Sbjct 17297461 C-----TTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTATGCCTAGTCATTCCG 17297407 Query 221 GATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTAT 280 | | | |||||| || ||| |||||||||||||||||||| ||||||||| ||||| | Sbjct 17297406 AAGAGCACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCT 17297347 Query 281 TCCTCAGGT 289 |||||| || Sbjct 17297346 TCCTCAAGT 17297338 >seq4 Length=30391017 Score = 107 bits (118), Expect = 3e-21 Identities = 172/245 (70%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 |||||||| ||| |||||| |||| ||||||| |||||||| ||||||||| |||||| Sbjct 28179591 GCCTTCGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCC 28179532 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCC 160 | ||||| |||||||| || ||||| | ||| || | ||| Sbjct 28179531 ACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGA 28179472 Query 161 CATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCG 220 | |||||| | || | | |||||||| ||||||||| || | | | |||| Sbjct 28179471 C-----TTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCG 28179417 Query 221 GATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTAT 280 | || |||||| || | | ||| |||||||||||||||| ||||||||| ||||| | Sbjct 28179416 AAGAATACTTGCCGCCCCC-TCTTATCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCT 28179358 Query 281 TCCTC 285 ||||| Sbjct 28179357 TCCTC 28179353 >seq2 Length=37273066 Score = 80.6 bits (88), Expect = 4e-13 Identities = 81/102 (79%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTG--CCACCTAC--GTAT 243 |||||||| |||||||||||| | | | ||| | ||| |||| || ||| | || | Sbjct 354929 CCGCCTACGTGCCCTTTACACCTAGTCATTCCAAA-AACACTTGGCCCCCCTCCCCGTCT 354871 Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||||||||| ||| ||||||||| ||||| |||||| Sbjct 354870 TACCGCGGCTGCTGGAACGGAGTTAGCCGGGGCTTCTTCCTC 354829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828799903652