Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq8 250 4e-64 seq1 196 8e-48 seq12 167 4e-39 seq3 87.8 3e-15 >seq8 Length=21838022 Score = 250 bits (276), Expect = 4e-64 Identities = 212/260 (82%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 |||| |||| |||||| |||||| ||| |||| ||| |||||| | | | | |||| Sbjct 19548064 CTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCGTTTACCGTAGGCA 19548005 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || |||| Sbjct 19548004 CGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCT 19547945 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || |||||||| |||||| ||||||||||||||| ||||||||||||||| Sbjct 19547944 CTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCC 19547885 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || | ||||||||||||||||||||||||||| ||| || |||| |||| Sbjct 19547884 AGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCACCTACAGCTCCAG 19547825 Query 256 GATGAGACGAGCCGACATCG 275 | | || |||||||||||| Sbjct 19547824 GTGGCGAAGAGCCGACATCG 19547805 Score = 93.3 bits (102), Expect = 7e-17 Identities = 98/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 19548201 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 19548142 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 19548141 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 19548082 Query 123 AAGGACAG 130 | ||| || Sbjct 19548081 AGGGAAAG 19548074 >seq1 Length=41795227 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 10687514 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 10687455 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 10687454 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 10687395 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 10687394 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 10687335 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 10687334 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 10687275 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 10687274 AGTCGACATCG 10687264 Score = 93.3 bits (102), Expect = 7e-17 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| |||||||||| |||| |||||||||||||||||| ||| || Sbjct 22085749 GGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTGGGGAAAGG 22085690 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGA 167 ||||||||| ||| |||||||| |||||| ||| Sbjct 22085689 TCCTCTCAATGTTCTAACGCCCACACCGGATATGGA 22085654 >seq12 Length=19964954 Score = 167 bits (184), Expect = 4e-39 Identities = 192/259 (74%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| |||||| |||||| ||| |||| ||| ||||| | | | | |||| Sbjct 16780326 CTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGTT-TACCGTAGGCAC 16780384 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 | ||||||| | |||| ||||||||||||| ||||| ||| || ||||| Sbjct 16780385 GATAACTGGTAC-----------GTCCTTCCCGGTCCTCTCATACTAGGGAAAGGTCCTC 16780433 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 |||| || || ||||| | |||| ||||||||||||||| |||||||||||||||| Sbjct 16780434 TCAATGCTCTAACACCCACACCAGATATGGACCGAACTGTCTCACGACGTTCTGAACCCA 16780493 Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 |||| | | || | ||| ||| ||||||||||| || |||| ||| || ||| | ||| Sbjct 16780494 GCTCACATACCGCATTAGTGGACGAACAGCCCAGCCATTGGAACCACCTATAGCTCTAGG 16780553 Query 257 ATGAGACGAGCCGACATCG 275 || | |||||||||||| Sbjct 16780554 TGGAAAAGAGCCGACATCG 16780572 >seq3 Length=38314702 Score = 87.8 bits (96), Expect = 3e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||||||||||||| |||||||||||||||||||| ||| || | ||||||| Sbjct 25024392 CGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGG 25024333 Query 218 GCG 220 ||| Sbjct 25024332 GCG 25024330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799909232