Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq8 250 4e-64
seq1 196 8e-48
seq12 167 4e-39
seq3 87.8 3e-15
>seq8
Length=21838022
Score = 250 bits (276), Expect = 4e-64
Identities = 212/260 (82%), Gaps = 1/260 (0%)
Strand=Plus/Minus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75
|||| |||| |||||| |||||| ||| |||| ||| |||||| | | | | ||||
Sbjct 19548064 CTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCGTTTACCGTAGGCA 19548005
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
| ||||||| |||||||||| |||| ||||||||||||||||||| ||| || ||||
Sbjct 19548004 CGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCT 19547945
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
||||| || |||||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct 19547944 CTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCC 19547885
Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255
||||| ||| || | ||||||||||||||||||||||||||| ||| || |||| ||||
Sbjct 19547884 AGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCACCTACAGCTCCAG 19547825
Query 256 GATGAGACGAGCCGACATCG 275
| | || ||||||||||||
Sbjct 19547824 GTGGCGAAGAGCCGACATCG 19547805
Score = 93.3 bits (102), Expect = 7e-17
Identities = 98/128 (77%), Gaps = 1/128 (1%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| |||| |||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 19548201 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 19548142
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 19548141 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 19548082
Query 123 AAGGACAG 130
| ||| ||
Sbjct 19548081 AGGGAAAG 19548074
>seq1
Length=41795227
Score = 196 bits (216), Expect = 8e-48
Identities = 194/251 (77%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 10687514 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 10687455
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| ||| ||| |||||||||||||| || ||||||| || | |||
Sbjct 10687454 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 10687395
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 10687394 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 10687335
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| |||| || |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 10687334 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 10687275
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 10687274 AGTCGACATCG 10687264
Score = 93.3 bits (102), Expect = 7e-17
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131
|||| | ||||||| |||||||||| |||| |||||||||||||||||| ||| ||
Sbjct 22085749 GGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTGGGGAAAGG 22085690
Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGA 167
||||||||| ||| |||||||| |||||| |||
Sbjct 22085689 TCCTCTCAATGTTCTAACGCCCACACCGGATATGGA 22085654
>seq12
Length=19964954
Score = 167 bits (184), Expect = 4e-39
Identities = 192/259 (74%), Gaps = 12/259 (5%)
Strand=Plus/Plus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76
|||| |||| |||||| |||||| ||| |||| ||| ||||| | | | | ||||
Sbjct 16780326 CTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGTT-TACCGTAGGCAC 16780384
Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136
| ||||||| | |||| ||||||||||||| ||||| ||| || |||||
Sbjct 16780385 GATAACTGGTAC-----------GTCCTTCCCGGTCCTCTCATACTAGGGAAAGGTCCTC 16780433
Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196
|||| || || ||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct 16780434 TCAATGCTCTAACACCCACACCAGATATGGACCGAACTGTCTCACGACGTTCTGAACCCA 16780493
Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256
|||| | | || | ||| ||| ||||||||||| || |||| ||| || ||| | |||
Sbjct 16780494 GCTCACATACCGCATTAGTGGACGAACAGCCCAGCCATTGGAACCACCTATAGCTCTAGG 16780553
Query 257 ATGAGACGAGCCGACATCG 275
|| | ||||||||||||
Sbjct 16780554 TGGAAAAGAGCCGACATCG 16780572
>seq3
Length=38314702
Score = 87.8 bits (96), Expect = 3e-15
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217
|||||| ||||||||||||||| |||||||||||||||||||| ||| || | |||||||
Sbjct 25024392 CGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGG 25024333
Query 218 GCG 220
|||
Sbjct 25024332 GCG 25024330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780799909232
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