Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq8 266 8e-69 seq2 174 4e-41 seq11 161 2e-37 seq3 152 1e-34 seq5 147 5e-33 seq12 125 2e-26 seq7 77.0 8e-12 >seq8 Length=21838022 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 19539982 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 19539923 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 19539922 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 19539863 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 19539862 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 19539803 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 19539802 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 19539754 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 19539753 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 19539696 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 19539695 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 19539650 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 19539649 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 19539603 >seq2 Length=37273066 Score = 174 bits (192), Expect = 4e-41 Identities = 155/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 354794 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 354735 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 354734 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 354675 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||| Sbjct 354674 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 354615 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 354614 CCAACTACCTAAT 354602 >seq11 Length=24454635 Score = 161 bits (178), Expect = 2e-37 Identities = 152/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| || | | || |||| ||| ||||| ||||| Sbjct 17297307 CTTTACAAGCAGCATTGCCCTTCTTCACTCATGTGATATTGCTGGATCGGGCTTTCGCCC 17297248 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 17297247 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 17297188 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| ||||| |||||||||| | ||| | | || ||| ||| |||||| Sbjct 17297187 TGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 17297128 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 17297127 CCAACTACCTAAT 17297115 >seq3 Length=38314702 Score = 152 bits (168), Expect = 1e-34 Identities = 114/134 (85%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 |||| | || |||||||||||||||||||||||||| ||||| || ||||||||| |||| Sbjct 24454459 ATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAATCTGGGCCATGTCTCAGTCCCAG 24454518 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||||||| ||||||||| |||| ||| || ||| || ||| || | Sbjct 24454519 TGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCA 24454578 Query 182 CCAACTAGCTAATC 195 |||||||||||||| Sbjct 24454579 CCAACTAGCTAATC 24454592 >seq5 Length=26596109 Score = 147 bits (162), Expect = 5e-33 Identities = 113/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93 ||||||| ||| | |||||||| ||||||||| | || |||||||||||||||||||||| Sbjct 4742395 GCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGT 4742336 Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153 ||||||||||| ||||| ||||| ||||||| |||| || |||||| ||| || ||| | Sbjct 4742335 AGGAGTCTGGATCGTGTTTCAGTCCCAGTGTAGCTGATCGTCCTCTTAGATCAACTACCG 4742276 Query 154 ATCGTCGCCTAGGT 167 ||| | |||| ||| Sbjct 4742275 ATCATTGCCTTGGT 4742262 >seq12 Length=19964954 Score = 125 bits (138), Expect = 2e-26 Identities = 93/108 (86%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 16 AAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTC 75 ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || |||| Sbjct 13037368 AAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTC 13037309 Query 76 CCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 |||||||||||||||| |||||||||| |||||||||||| |||||| Sbjct 13037308 CCCACTGCTGCCTCCC--AGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 13037263 >seq7 Length=26849004 Score = 77.0 bits (84), Expect = 8e-12 Identities = 71/89 (80%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| || ||| || |||| ||| ||||| ||||| Sbjct 10997153 CTTTACAAGCGGCATTGCCCTTCTTCACTCATGCGATATTGCTGGATCGGGCTTTCGCCC 10997212 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCC 90 ||||| ||| |||||||||||||||| || Sbjct 10997213 ATTGTCCAAGATTCCCCACTGCTGCCCCC 10997241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222399853312