Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq8 266 8e-69
seq2 174 4e-41
seq11 161 2e-37
seq3 152 1e-34
seq5 147 5e-33
seq12 125 2e-26
seq7 77.0 8e-12
>seq8
Length=21838022
Score = 266 bits (294), Expect = 8e-69
Identities = 306/410 (75%), Gaps = 30/410 (7%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 19539982 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 19539923
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 19539922 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 19539863
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 19539862 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 19539803
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | | ||| | | | || | || || ||||
Sbjct 19539802 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 19539754
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| |||||||||||| ||| | ||||||| ||||
Sbjct 19539753 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 19539696
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||||| ||||||| ||| || || ||||
Sbjct 19539695 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 19539650
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 19539649 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 19539603
>seq2
Length=37273066
Score = 174 bits (192), Expect = 4e-41
Identities = 155/193 (80%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 354794 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 354735
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 354734 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 354675
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||||
Sbjct 354674 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 354615
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 354614 CCAACTACCTAAT 354602
>seq11
Length=24454635
Score = 161 bits (178), Expect = 2e-37
Identities = 152/193 (79%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| || | | || |||| ||| ||||| |||||
Sbjct 17297307 CTTTACAAGCAGCATTGCCCTTCTTCACTCATGTGATATTGCTGGATCGGGCTTTCGCCC 17297248
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 17297247 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 17297188
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| ||||| |||||||||| | ||| | | || ||| ||| ||||||
Sbjct 17297187 TGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 17297128
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 17297127 CCAACTACCTAAT 17297115
>seq3
Length=38314702
Score = 152 bits (168), Expect = 1e-34
Identities = 114/134 (85%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
|||| | || |||||||||||||||||||||||||| ||||| || ||||||||| ||||
Sbjct 24454459 ATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAATCTGGGCCATGTCTCAGTCCCAG 24454518
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||||||| ||||||||| |||| ||| || ||| || ||| || |
Sbjct 24454519 TGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCA 24454578
Query 182 CCAACTAGCTAATC 195
||||||||||||||
Sbjct 24454579 CCAACTAGCTAATC 24454592
>seq5
Length=26596109
Score = 147 bits (162), Expect = 5e-33
Identities = 113/134 (84%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93
||||||| ||| | |||||||| ||||||||| | || ||||||||||||||||||||||
Sbjct 4742395 GCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGT 4742336
Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153
||||||||||| ||||| ||||| ||||||| |||| || |||||| ||| || ||| |
Sbjct 4742335 AGGAGTCTGGATCGTGTTTCAGTCCCAGTGTAGCTGATCGTCCTCTTAGATCAACTACCG 4742276
Query 154 ATCGTCGCCTAGGT 167
||| | |||| |||
Sbjct 4742275 ATCATTGCCTTGGT 4742262
>seq12
Length=19964954
Score = 125 bits (138), Expect = 2e-26
Identities = 93/108 (86%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 16 AAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTC 75
||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || ||||
Sbjct 13037368 AAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTC 13037309
Query 76 CCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
|||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 13037308 CCCACTGCTGCCTCCC--AGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 13037263
>seq7
Length=26849004
Score = 77.0 bits (84), Expect = 8e-12
Identities = 71/89 (80%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| || ||| || |||| ||| ||||| |||||
Sbjct 10997153 CTTTACAAGCGGCATTGCCCTTCTTCACTCATGCGATATTGCTGGATCGGGCTTTCGCCC 10997212
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCC 90
||||| ||| |||||||||||||||| ||
Sbjct 10997213 ATTGTCCAAGATTCCCCACTGCTGCCCCC 10997241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222399853312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |