Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq8 329 1e-87
seq11 248 3e-63
seq2 232 2e-58
seq3 165 2e-38
seq5 138 3e-30
seq7 118 3e-24
seq12 111 5e-22
seq4 98.7 3e-18
>seq8
Length=21838022
Score = 329 bits (364), Expect = 1e-87
Identities = 280/343 (82%), Gaps = 3/343 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 19539785 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 19539844
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 19539845 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 19539904
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 19539905 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 19539964
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397
||||| |||||||| || ||| | ||| |||| | |||||||||| ||||||
Sbjct 19539965 AGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 19540024
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| ||||||||||||||||||| || ||| || |||||||||||
Sbjct 19540025 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 19540084
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||||||||| || |||||||| || | |||||
Sbjct 19540085 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 19540126
>seq11
Length=24454635
Score = 248 bits (274), Expect = 3e-63
Identities = 253/327 (77%), Gaps = 5/327 (2%)
Strand=Plus/Plus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| ||||| |||| |||||| | | ||| |||| | || |
Sbjct 17297115 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCAG 17297174
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||||| |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 17297175 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 17297234
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| |||||| ||| |||||| | | |||| || ||||| | |
Sbjct 17297235 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCACATGAGTGAAGAAGGGCAAT 17297294
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| ||||| | | | ||| |||| | ||||||||| |||||||
Sbjct 17297295 GCTGCTTGTAAAGCTCTTTCCTCGAGTGCACGATCATGATAGGACTTGAGGAAGAAGCCC 17297354
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||||| |||||||||||||||||||| ||| |||||| || | | | |||||| |
Sbjct 17297355 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGCTCTTCGGAATGA 17297414
Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490
|| ||| ||||||| |||||| |||
Sbjct 17297415 CT-AGGCATAAAGGGCACGTAGGCGGT 17297440
>seq2
Length=37273066
Score = 232 bits (256), Expect = 2e-58
Identities = 254/331 (77%), Gaps = 10/331 (3%)
Strand=Plus/Plus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| ||||| |||| |||||| | | ||| |||| | || ||
Sbjct 354602 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 354661
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||||| |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 354662 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 354721
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | |
Sbjct 354722 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 354781
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| || || | | ||| ||||| | ||| ||||| |||||||
Sbjct 354782 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 354841
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATAC--GTAGGGGG--CTAGCGTTATCCGGA 459
||||||||| ||| |||||||||||||||| || | |||||| | || ||| | |||
Sbjct 354842 CGGCTAACTCCGTTCCAGCAGCCGCGGTAAGACGGGGAGGGGGGCCAAGTGTT-TTTGGA 354900
Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490
|| ||| || |||||||| |||||| |||
Sbjct 354901 ATGACT-AGGTGTAAAGGGCACGTAGGCGGT 354930
>seq3
Length=38314702
Score = 165 bits (182), Expect = 2e-38
Identities = 127/151 (84%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209
|||| || | |||||||||||||||||||||| ||| || |||||||||| ||| ||||
Sbjct 24454609 AGGAGAGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGACGATGATC 24454550
Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269
|||||| | | |||||| ||||| |||||| ||| ||||||||| || ||| | |||||
Sbjct 24454549 AGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACATGGCCCAGATTCCTA 24454490
Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAAT 300
||||||||||||||||||||| || | ||||
Sbjct 24454489 CGGGAGGCAGCAGTGGGGAATTTTCCGCAAT 24454459
>seq5
Length=26596109
Score = 138 bits (152), Expect = 3e-30
Identities = 111/134 (83%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 195 ACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254
|||||||| | |||| |||| || || ||||| |||| || ||| ||| ||||| |||
Sbjct 4742262 ACCAAGGCAATGATCGGTAGTTGATCTAAGAGGACGATCAGCTACACTGGGACTGAAACA 4742321
Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314
|| |||| |||||||||||||||||||||||||||| || | |||||||| |||||||||
Sbjct 4742322 CGATCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGA 4742381
Query 315 TGCAGCAACGCCGC 328
| ||||| |||||
Sbjct 4742382 CGGAGCAATGCCGC 4742395
>seq7
Length=26849004
Score = 118 bits (130), Expect = 3e-24
Identities = 121/156 (78%), Gaps = 4/156 (3%)
Strand=Plus/Minus
Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331
|| |||||||||||||||| ||| ||||||||| |||||| ||| |||||| ||| ||
Sbjct 10997241 GGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCATG 10997182
Query 332 AGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTA 387
|| || ||||| | | | | | |||||||||| || || | | | ||| ||||| |
Sbjct 10997181 AGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCTTCGAGTGCACGATTATGACATGA 10997122
Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCA 423
|| ||||| |||||| ||||||||| ||||| ||||
Sbjct 10997121 CTCGAGGAAGAAGCCTCGGCTAACTCCGTGCTAGCA 10997086
>seq12
Length=19964954
Score = 111 bits (122), Expect = 5e-22
Identities = 90/108 (83%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 239 CATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACA 298
|| ||| |||||||||||| ||| |||||| |||||||||||||||||||| || | ||
Sbjct 13037263 CACTGGGACTGAGACACGGCCCAGACTCCT--GGGAGGCAGCAGTGGGGAATTTTCCGCA 13037320
Query 299 ATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346
|||||| ||||||||| | ||||| |||||||| | |||||||||
Sbjct 13037321 ATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTT 13037368
>seq4
Length=30391017
Score = 98.7 bits (108), Expect = 3e-18
Identities = 93/116 (80%), Gaps = 2/116 (2%)
Strand=Plus/Plus
Query 375 GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434
||| ||||| | ||| ||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 28179337 GATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGATAAG 28179396
Query 435 ACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490
| | || ||| || || | |||||| ||| ||||||||||| |||||| |||
Sbjct 28179397 A-GGGGGCGGCAAGTATTCTTCGGAATGACT-AGGCGTAAAGGGCACGTAGGCGGT 28179450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497599820288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |