Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq8 329 1e-87 seq11 248 3e-63 seq2 232 2e-58 seq3 165 2e-38 seq5 138 3e-30 seq7 118 3e-24 seq12 111 5e-22 seq4 98.7 3e-18 >seq8 Length=21838022 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 19539785 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 19539844 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 19539845 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 19539904 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 19539905 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 19539964 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 19539965 AGGCCCACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 19540024 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 19540025 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 19540084 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 19540085 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 19540126 >seq11 Length=24454635 Score = 248 bits (274), Expect = 3e-63 Identities = 253/327 (77%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || | Sbjct 17297115 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCAG 17297174 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 17297175 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 17297234 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| | | |||| || ||||| | | Sbjct 17297235 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCACATGAGTGAAGAAGGGCAAT 17297294 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| ||||| | | | ||| |||| | ||||||||| ||||||| Sbjct 17297295 GCTGCTTGTAAAGCTCTTTCCTCGAGTGCACGATCATGATAGGACTTGAGGAAGAAGCCC 17297354 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || | | | |||||| | Sbjct 17297355 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGCTCTTCGGAATGA 17297414 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||| ||||||| |||||| ||| Sbjct 17297415 CT-AGGCATAAAGGGCACGTAGGCGGT 17297440 >seq2 Length=37273066 Score = 232 bits (256), Expect = 2e-58 Identities = 254/331 (77%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 354602 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 354661 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 354662 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 354721 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 354722 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 354781 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 354782 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 354841 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATAC--GTAGGGGG--CTAGCGTTATCCGGA 459 ||||||||| ||| |||||||||||||||| || | |||||| | || ||| | ||| Sbjct 354842 CGGCTAACTCCGTTCCAGCAGCCGCGGTAAGACGGGGAGGGGGGCCAAGTGTT-TTTGGA 354900 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||| || |||||||| |||||| ||| Sbjct 354901 ATGACT-AGGTGTAAAGGGCACGTAGGCGGT 354930 >seq3 Length=38314702 Score = 165 bits (182), Expect = 2e-38 Identities = 127/151 (84%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| || | |||||||||||||||||||||| ||| || |||||||||| ||| |||| Sbjct 24454609 AGGAGAGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGACGATGATC 24454550 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||||| | | |||||| ||||| |||||| ||| ||||||||| || ||| | ||||| Sbjct 24454549 AGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACATGGCCCAGATTCCTA 24454490 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAAT 300 ||||||||||||||||||||| || | |||| Sbjct 24454489 CGGGAGGCAGCAGTGGGGAATTTTCCGCAAT 24454459 >seq5 Length=26596109 Score = 138 bits (152), Expect = 3e-30 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 195 ACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254 |||||||| | |||| |||| || || ||||| |||| || ||| ||| ||||| ||| Sbjct 4742262 ACCAAGGCAATGATCGGTAGTTGATCTAAGAGGACGATCAGCTACACTGGGACTGAAACA 4742321 Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 || |||| |||||||||||||||||||||||||||| || | |||||||| ||||||||| Sbjct 4742322 CGATCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGA 4742381 Query 315 TGCAGCAACGCCGC 328 | ||||| ||||| Sbjct 4742382 CGGAGCAATGCCGC 4742395 >seq7 Length=26849004 Score = 118 bits (130), Expect = 3e-24 Identities = 121/156 (78%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 || |||||||||||||||| ||| ||||||||| |||||| ||| |||||| ||| || Sbjct 10997241 GGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCATG 10997182 Query 332 AGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTA 387 || || ||||| | | | | | |||||||||| || || | | | ||| ||||| | Sbjct 10997181 AGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCTTCGAGTGCACGATTATGACATGA 10997122 Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCA 423 || ||||| |||||| ||||||||| ||||| |||| Sbjct 10997121 CTCGAGGAAGAAGCCTCGGCTAACTCCGTGCTAGCA 10997086 >seq12 Length=19964954 Score = 111 bits (122), Expect = 5e-22 Identities = 90/108 (83%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 239 CATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACA 298 || ||| |||||||||||| ||| |||||| |||||||||||||||||||| || | || Sbjct 13037263 CACTGGGACTGAGACACGGCCCAGACTCCT--GGGAGGCAGCAGTGGGGAATTTTCCGCA 13037320 Query 299 ATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||| ||||||||| | ||||| |||||||| | ||||||||| Sbjct 13037321 ATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTT 13037368 >seq4 Length=30391017 Score = 98.7 bits (108), Expect = 3e-18 Identities = 93/116 (80%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 375 GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 ||| ||||| | ||| ||||| |||||||||||||||| |||||||||||||||| ||| Sbjct 28179337 GATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGATAAG 28179396 Query 435 ACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | | || ||| || || | |||||| ||| ||||||||||| |||||| ||| Sbjct 28179397 A-GGGGGCGGCAAGTATTCTTCGGAATGACT-AGGCGTAAAGGGCACGTAGGCGGT 28179450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599820288