Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq8 264 3e-68 seq1 141 2e-31 seq11 129 1e-27 seq4 118 3e-24 seq12 98.7 2e-18 seq2 89.7 1e-15 seq7 77.0 8e-12 >seq8 Length=21838022 Score = 264 bits (292), Expect = 3e-68 Identities = 303/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 19540017 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 19540076 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 19540077 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 19540136 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 19540137 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 19540196 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||| | || || | | |||||||| |||||| Sbjct 19540197 GAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAA 19540256 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 19540257 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 19540316 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTG 363 ||| |||| ||||||| ||||||||||||| |||||||||| | | ||| | | Sbjct 19540317 AGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTCGACCC 19540375 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 19540376 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 19540420 >seq1 Length=41795227 Score = 141 bits (156), Expect = 2e-31 Identities = 123/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| ||||| Sbjct 10710130 AGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAA 10710071 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| ||| |||| || ||| ||| || ||||||| |||||||| ||||||||| Sbjct 10710070 GGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATT 10710011 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||| |||||||||||||| Sbjct 10710010 AGATACCCTGGTAGTCCATGCCGTAAACGATGA 10709978 >seq11 Length=24454635 Score = 129 bits (142), Expect = 1e-27 Identities = 183/254 (72%), Gaps = 10/254 (4%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||||||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 17297338 ACTTGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 17297397 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || | | | |||||| ||| ||| ||||||| |||||| ||| | || | ||| Sbjct 17297398 AGTGCTCTTCGGAATGACTAGGCATAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 17297457 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||| | ||||| | || || ||||| Sbjct 17297458 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 17297511 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 | || ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| Sbjct 17297512 ACAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 17297571 Query 238 TGGCGAAGGCGGCT 251 |||||||| ||| Sbjct 17297572 AAGCGAAGGCAGCT 17297585 >seq4 Length=30391017 Score = 118 bits (130), Expect = 3e-24 Identities = 185/260 (71%), Gaps = 11/260 (4%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||| ||| | | || ||| Sbjct 28179349 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGATAAGA-GGGGGCGGCA 28179407 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || || | |||||| ||| ||||||||||| |||||| ||| | || | ||| Sbjct 28179408 AGTATTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 28179467 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||| | ||||| | || || ||||| Sbjct 28179468 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 28179521 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| Sbjct 28179522 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 28179581 Query 238 TGGCGAAGGCGGCTTGCTGG 257 |||||||| ||| |||| Sbjct 28179582 AAGCGAAGGCAGCTCTCTGG 28179601 >seq12 Length=19964954 Score = 98.7 bits (108), Expect = 2e-18 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 || ||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 2068368 ACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAT 2068309 Query 324 GCCGTAAACGATGA 337 |||||||||||||| Sbjct 2068308 GCCGTAAACGATGA 2068295 >seq2 Length=37273066 Score = 89.7 bits (98), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC--GTAGGGGG 59 ||| ||||| |||||||||||||||| ||| |||||||||||||||| || | |||||| Sbjct 354825 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTTCCAGCAGCCGCGGTAAGACGGGGAGGGGG 354884 Query 60 --CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 | || ||| | ||||| ||| || |||||||| |||||| ||| Sbjct 354885 GCCAAGTGTT-TTTGGAATGACTAGGTGTAAAGGGCACGTAGGCGGT 354930 >seq7 Length=26849004 Score = 77.0 bits (84), Expect = 8e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||||| | | |||||||||||| ||||||| |||||||||| |||||||| ||| Sbjct 11832171 TGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACC 11832112 Query 312 CTGGTAGTCCACGCCGTAAACGATG 336 | |||||| ||||||||||||| Sbjct 11832111 CCATTAGTCCTAGCCGTAAACGATG 11832087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203199855616