Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq9 713 0.0
seq5 145 2e-32
seq2 100 9e-19
seq1 78.8 3e-12
>seq9
Length=18641908
Score = 713 bits (790), Expect = 0.0
Identities = 481/534 (90%), Gaps = 8/534 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 11228 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 11169
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 11168 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 11109
Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181
|||||| | || ||||| |||| || || || | | || | ||||| ||
Sbjct 11108 GGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGG--GGCCAGGCCCCGCTTCCGACTC 11051
Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241
| || ||||||||| |||| ||| |||||||||||||||||||||| | |||||||
Sbjct 11050 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAG-GGCTCCC 10992
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10991 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 10932
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 10931 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 10872
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10871 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 10812
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10811 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 10752
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 10751 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 10698
>seq5
Length=26596109
Score = 145 bits (160), Expect = 2e-32
Identities = 82/83 (99%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322083 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 322024
Query 513 AGAAATCACATTGCGTCAACATC 535
|||||||||||||||||| ||||
Sbjct 322023 AGAAATCACATTGCGTCAGCATC 322001
>seq2
Length=37273066
Score = 100 bits (110), Expect = 9e-19
Identities = 111/146 (76%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACAC 254
|| || | ||| ||| || ||||||||||| | | | |||||||| ||||||| |
Sbjct 11087747 AACAATGTTAAAAGTAATGATATTTCACTTGTGA-GCGAGGGCTCCCATTTATTCTCTAT 11087805
Query 255 CTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314
||||||||||||| | ||||||| || ||| |||||||| || |||||||||||
Sbjct 11087806 ATCTCAAGTCATTTTATGAAGTCGGTTTAAAGTTAAGCTCAA---AGTTTTCTTTCCCCG 11087862
Query 315 CTGATTCCGCCAAGCCCGTTCCCTTG 340
|| |||| | ||||||||||||||
Sbjct 11087863 CTAATTCTATCGAGCCCGTTCCCTTG 11087888
>seq1
Length=41795227
Score = 78.8 bits (86), Expect = 3e-12
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| ||||
Sbjct 10686567 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 10686508
Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
||||||||| || ||| | ||||||| |||||||||||| | ||||
Sbjct 10686507 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 10686462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635199803776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |