Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9 713 0.0 seq5 145 2e-32 seq2 100 9e-19 seq1 78.8 3e-12 >seq9 Length=18641908 Score = 713 bits (790), Expect = 0.0 Identities = 481/534 (90%), Gaps = 8/534 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 11228 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 11169 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11168 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 11109 Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 |||||| | || ||||| |||| || || || | | || | ||||| || Sbjct 11108 GGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGG--GGCCAGGCCCCGCTTCCGACTC 11051 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 | || ||||||||| |||| ||| |||||||||||||||||||||| | ||||||| Sbjct 11050 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAG-GGCTCCC 10992 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10991 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 10932 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 10931 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 10872 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10871 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 10812 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10811 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 10752 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 10751 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 10698 >seq5 Length=26596109 Score = 145 bits (160), Expect = 2e-32 Identities = 82/83 (99%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322083 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 322024 Query 513 AGAAATCACATTGCGTCAACATC 535 |||||||||||||||||| |||| Sbjct 322023 AGAAATCACATTGCGTCAGCATC 322001 >seq2 Length=37273066 Score = 100 bits (110), Expect = 9e-19 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACAC 254 || || | ||| ||| || ||||||||||| | | | |||||||| ||||||| | Sbjct 11087747 AACAATGTTAAAAGTAATGATATTTCACTTGTGA-GCGAGGGCTCCCATTTATTCTCTAT 11087805 Query 255 CTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314 ||||||||||||| | ||||||| || ||| |||||||| || ||||||||||| Sbjct 11087806 ATCTCAAGTCATTTTATGAAGTCGGTTTAAAGTTAAGCTCAA---AGTTTTCTTTCCCCG 11087862 Query 315 CTGATTCCGCCAAGCCCGTTCCCTTG 340 || |||| | |||||||||||||| Sbjct 11087863 CTAATTCTATCGAGCCCGTTCCCTTG 11087888 >seq1 Length=41795227 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 10686567 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 10686508 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 10686507 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 10686462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199803776