Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq8 136 8e-30 seq2 120 6e-25 seq11 107 4e-21 seq5 91.5 3e-16 seq3 84.2 5e-14 seq12 77.0 7e-12 >seq8 Length=21838022 Score = 136 bits (150), Expect = 8e-30 Identities = 197/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 19540053 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 19540005 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 19540004 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGG-CCTTCCACCTCCACGC 19539952 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 19539951 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 19539892 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 19539891 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 19539832 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 19539831 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 19539793 >seq2 Length=37273066 Score = 120 bits (132), Expect = 6e-25 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 354776 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 354717 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 354716 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 354657 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| |||||| || |||||||||| || Sbjct 354656 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAATACTAC 354597 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 354596 GCAGGCTCATCAAACAGCG 354578 >seq11 Length=24454635 Score = 107 bits (118), Expect = 4e-21 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| || | || ||| |||||| |||| ||||| |||||||||| ||||| ||||| Sbjct 17297267 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 17297208 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || |||||||||||| ||| ||||| || | || ||| | ||| |||| | || Sbjct 17297207 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCATTGG 17297148 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303 || ||| ||| |||||| || |||||||||| ||||| | |||| ||| || Sbjct 17297147 CTTGGTCAGCCTTTACCCGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 17297091 >seq5 Length=26596109 Score = 91.5 bits (100), Expect = 3e-16 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| |||||||||||||||||||||| |||| || Sbjct 4742381 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGATCG 4742322 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||| ||||| ||| ||| | || | |||||| ||| | ||| | ||| | | || ||| Sbjct 4742321 TGTTTCAGTCCCAGTGTAGCTGATCGTCCTCTTAGATCAACTACCGATCATTGCCTTGGT 4742262 >seq3 Length=38314702 Score = 84.2 bits (92), Expect = 5e-14 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGG 213 || ||||| |||||||||||||||||||| | ||| || ||||||||| ||| ||||| Sbjct 24454466 AAAATTCCCCACTGCTGCCTCCCGTAGGAATCTGGGCCATGTCTCAGTCCCAGTGTGGCT 24454525 Query 214 GACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTA 273 || | ||||||| || | ||| ||| | | || ||| || || || | || |||| Sbjct 24454526 GATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTA 24454585 Query 274 CCTAAT 279 ||||| Sbjct 24454586 GCTAAT 24454591 >seq12 Length=19964954 Score = 77.0 bits (84), Expect = 7e-12 Identities = 80/104 (77%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| ||| ||||| | | ||| |||| || ||| |||||| || ||||| || Sbjct 13037364 CCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCA 13037305 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 |||||||||||| |||||| ||| |||||||||||| ||| || Sbjct 13037304 CTGCTGCCTCCC--AGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 13037263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068799871744