Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq9 107 3e-21
seq5 87.8 3e-15
>seq9
Length=18641908
Score = 107 bits (118), Expect = 3e-21
Identities = 98/121 (81%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 11551 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 11608
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||| |||||||| ||||||||||||||||||||||||| || |
Sbjct 11609 GGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 11668
Query 121 G 121
|
Sbjct 11669 G 11669
>seq5
Length=26596109
Score = 87.8 bits (96), Expect = 3e-15
Identities = 94/121 (78%), Gaps = 4/121 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || || |
Sbjct 322940 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAAT 322997
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||| |||||||| |||||| |||| |||||||||||| || |
Sbjct 322998 GGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACACCTC--AGTCAGAATCCAAGCTA 323055
Query 121 G 121
|
Sbjct 323056 G 323056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819199904768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |