Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq9 585 8e-165
>seq9
Length=18641908
Score = 585 bits (648), Expect = 8e-165
Identities = 442/513 (86%), Gaps = 12/513 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| | |||| |||| |||| ||||||||||||||||||
Sbjct 6313 GTACTCATTCCAATTACCAGACACTAAAGCGCCCGGTATTGTTATTTATTGTCACTACCT 6254
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6253 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6194
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 6193 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 6134
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
|||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 6133 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 6074
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293
| | |||| |||||| ||| |||||| |||||||| | ||| | | | || |
Sbjct 6073 CGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATC--GGATCAGCGGGCAGAGCCCG 6016
Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352
||| | ||||||||||||||| | ||||| || ||||||||||||| | ||| |||||
Sbjct 6015 CGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATT 5956
Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412
|||||||||||||| |||||||||| |||| | |||| |||||| |||| ||||||||
Sbjct 5955 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CACGTACCATCAAACAAACTATAACTGA 5897
Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471
||||||||||||||||||||||||| || ||| | | |||||| ||||||||||||
Sbjct 5896 TTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCT 5837
Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||
Sbjct 5836 TAATCTTTGAGACAAGCATATGACTACTGGCAG 5804
Score = 233 bits (258), Expect = 6e-59
Identities = 177/205 (86%), Gaps = 3/205 (1%)
Strand=Plus/Minus
Query 302 TTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| | ||||| ||| |||||||||||| | ||| |||||||||||||
Sbjct 1088757 TTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 1088698
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||| |||||||||| |||| | | ||| |||||| |||| ||||||||||||||||
Sbjct 1088697 AATTACTACGGTTATCCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATGA 1088639
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479
|||||||||| ||| || || ||| || |||||| ||||||||||||||||||||
Sbjct 1088638 GCCATTCGCAATTTTACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATCTTT 1088579
Query 480 GAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||
Sbjct 1088578 GAGACAAGCATATGACTACTGGCAG 1088554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510399818752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |