Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq9 585 8e-165 >seq9 Length=18641908 Score = 585 bits (648), Expect = 8e-165 Identities = 442/513 (86%), Gaps = 12/513 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | |||| |||| |||| |||||||||||||||||| Sbjct 6313 GTACTCATTCCAATTACCAGACACTAAAGCGCCCGGTATTGTTATTTATTGTCACTACCT 6254 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6253 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 6194 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 6193 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 6134 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 6133 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 6074 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | | |||| |||||| ||| |||||| |||||||| | ||| | | | || | Sbjct 6073 CGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATC--GGATCAGCGGGCAGAGCCCG 6016 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| | ||||| || ||||||||||||| | ||| ||||| Sbjct 6015 CGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATT 5956 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| | |||| |||||| |||| |||||||| Sbjct 5955 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CACGTACCATCAAACAAACTATAACTGA 5897 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || ||| | | |||||| |||||||||||| Sbjct 5896 TTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCT 5837 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 5836 TAATCTTTGAGACAAGCATATGACTACTGGCAG 5804 Score = 233 bits (258), Expect = 6e-59 Identities = 177/205 (86%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| | ||||| ||| |||||||||||| | ||| ||||||||||||| Sbjct 1088757 TTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 1088698 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||||||||| |||| | | ||| |||||| |||| |||||||||||||||| Sbjct 1088697 AATTACTACGGTTATCCGAGTAGCACG-TACCATCAAACAAACTATAACTGATTTAATGA 1088639 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||| ||| || || ||| || |||||| |||||||||||||||||||| Sbjct 1088638 GCCATTCGCAATTTTACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATCTTT 1088579 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 1088578 GAGACAAGCATATGACTACTGGCAG 1088554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399818752