Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq3 688 0.0 seq9 116 4e-21 >seq3 Length=38314702 Score = 688 bits (762), Expect = 0.0 Identities = 747/988 (76%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 24885151 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 24885092 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | |||||| |||| || || |||||||||||||||| || Sbjct 24885091 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 24885033 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || ||||| || || ||||||| | | ||||| ||||| Sbjct 24885032 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 24884973 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 24884972 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 24884913 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| ||||| | || |||||| | || || || ||||||| | || | || Sbjct 24884912 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 24884853 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || | | ||||||||||||||||||||||| || ||| Sbjct 24884852 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 24884793 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 ||| ||||||||||| ||||| ||||||||| || ||||| || || |||||| |||| Sbjct 24884792 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 24884733 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||| ||| | | ||||| | ||||| || |||||| |||| ||||||| | || || Sbjct 24884732 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 24884673 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 ||||||||||| |||| |||| |||||||||| ||||| || || |||||||||||||| Sbjct 24884672 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 24884613 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 || |||||| | ||||| ||||| |||||||| || || || ||| |||||||||||| Sbjct 24884612 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 24884553 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || |||| || |||||| | |||| || || || |||| || ||| || | || Sbjct 24884552 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGG 24884493 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 ||||| || |||||||||||||||||||| || || || || || ||||| || || || Sbjct 24884492 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 24884433 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 || || |||||||||||||| ||||||||||| || ||| | ||||||||| | || Sbjct 24884432 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGC 24884373 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 |||||||||||| || || || ||||||||||| | ||| || ||| ||||| ||||| Sbjct 24884372 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 24884313 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 ||| || || ||||| |||||||| || | | || | |||||| | ||| | || || Sbjct 24884312 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATAC 24884253 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 |||||| || | | ||||| ||| ||| || |||||||| |||||||| ||||| || Sbjct 24884252 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 24884193 Query 160762 TCACAACTTCCCTCTCGACCTTGCTGCT 160789 ||||||||||||||| ||||| |||||| Sbjct 24884192 TCACAACTTCCCTCTAGACCTAGCTGCT 24884165 Score = 578 bits (640), Expect = 4e-160 Identities = 740/1012 (73%), Gaps = 7/1012 (1%) Strand=Plus/Plus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | | || ||||| |||||||| || |||||||| || | |||||| Sbjct 24894036 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 24894095 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 24894096 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 24894155 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT-GCAAATTTTCTTA-CAGCGGCAG 161704 |||||||||||| | || ||||||||| | || ||| |||| ||||||| | || |||| Sbjct 24894156 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 24894213 Query 161705 TTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTC 161764 || ||| || || | | | | || ||| | | || || ||||| || || || | Sbjct 24894214 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 24894273 Query 161765 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 161824 |||||||||| | ||| ||| | || || || |||| |||||| || ||||| | Sbjct 24894274 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 24894333 Query 161825 GGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGT 161883 ||||||| || || || || |||||| | ||||| |||||||||||||| ||| || | Sbjct 24894334 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 24894393 Query 161884 ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTT 161943 | || ||||| ||||| ||| | |||||||| || || ||||||||||| ||| || Sbjct 24894394 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 24894452 Query 161944 CTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCT 162003 || || ||||| ||||| || || |||||||| ||||| ||||| || || || Sbjct 24894453 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 24894512 Query 162004 ATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCAC 162063 || || | ||| | || ||| | ||||| || || ||||||||| | || || || || Sbjct 24894513 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 24894572 Query 162064 ATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACT 162123 |||||||| || || || | || || | ||| |||| | |||||||| || | || Sbjct 24894573 ATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACC 24894632 Query 162124 GTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCT 162183 || |||||||| || | | || ||||| |||||||| ||| |||||| || | Sbjct 24894633 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 24894692 Query 162184 ACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTC 162243 || |||| || || ||||| || ||||| || || || || || ||||| || ||||| Sbjct 24894693 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTT 24894752 Query 162244 GGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATG 162303 ||| |||||||| ||||| |||||||| |||||||||||||| || || || |||| Sbjct 24894753 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 24894812 Query 162304 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGAC 162363 ||| | |||| ||| |||| || | | || || ||||| || || ||||| || ||| Sbjct 24894813 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGAC 24894872 Query 162364 TTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAG 162423 || || || ||||| || ||||||||||| |||||||||||||| || ||||||||||| Sbjct 24894873 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 24894932 Query 162424 AATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAG 162483 ||||| || || || || ||| ||||||| ||| ||||| | ||||| || ||||| Sbjct 24894933 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 24894992 Query 162484 AACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 || || ||||||||||||| ||||| || | || ||||| || | ||||| Sbjct 24894993 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT-TTAATGG 24895043 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 161008 CCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACT 161067 |||||||| || |||||||| || ||||| || ||||| |||||||||||| ||| | Sbjct 37280131 CCCTACTCATGCCGTGCTGGAGCATGCTCAACCTGTGCCGGTAAGATTGAGGCTGGCTCC 37280190 Query 161068 GTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTG 161127 || || || || ||| ||| ||||| ||||||| || | ||| ||| | ||| ||| Sbjct 37280191 GTCGACCAGTCGGATGGATCATTCCTTGATGATGCGCAGCAGGAAGAAGGCTATGTGCTG 37280250 Query 161128 ACCTGCGT 161135 || ||||| Sbjct 37280251 ACATGCGT 37280258 >seq9 Length=18641908 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 160514 TACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTC 160573 || || || || || |||||||||||||| ||||||||||| || ||| | |||||| Sbjct 2646509 TATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTC 2646568 Query 160574 TTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATG 160633 ||| | |||||||||||||| || || || ||||||||||| | ||| || ||| ||| Sbjct 2646569 TTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATG 2646628 Query 160634 GCATTCAATCTCAA 160647 || |||||||| || Sbjct 2646629 GCTTTCAATCTAAA 2646642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551375917293600