Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3 598 5e-166 seq9 84.2 3e-11 >seq3 Length=38314702 Score = 598 bits (662), Expect = 5e-166 Identities = 718/965 (74%), Gaps = 12/965 (1%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 |||||||| || |||| ||||||||||| ||||||||||||| ||| | | | ||||| Sbjct 24885124 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 24885066 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || ||||||| ||||||| || || ||||| |||||||| || || | Sbjct 24885065 T-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTG 24885007 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTT 189055 | || || ||||||| | | || |||||||| || ||||||||||| || | ||| Sbjct 24885006 AGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTA 24884947 Query 189056 CATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGT 189115 | || || || || | ||||| ||||| || |||||||| || || | ||||||| Sbjct 24884946 CTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 24884887 Query 189116 GGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACG 189175 || | ||||| || ||||||| | || | || | |||||| | | || | || | Sbjct 24884886 GGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-G 24884830 Query 189176 CCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCT 189232 | | | |||||||||||||||||||| || |||||| ||||||||||||||||| | Sbjct 24884829 CTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-T 24884771 Query 189233 GCA-TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTT 189291 || |||| || || || ||||||||||| || | || || || || | || ||| || Sbjct 24884770 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 24884711 Query 189292 GGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATG 189351 |||||||| ||||||||| | ||||| || || || ||| || ||||||| ||| Sbjct 24884710 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 24884651 Query 189352 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCA 189411 |||| ||||| |||||||| |||||||| ||||| || || |||||| | || || || Sbjct 24884650 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 24884591 Query 189412 GGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTG 189471 ||||| ||||| ||||| || ||| || ||||||||||| | || |||||| || Sbjct 24884590 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 24884531 Query 189472 GTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAA 189531 | | ||||||||||||| ||| ||| || | ||||||| ||||| ||||| ||| Sbjct 24884530 ATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 24884471 Query 189532 GAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCA 189591 || || || || || || || |||||||| ||||| || || | |||||||||||||| Sbjct 24884470 GAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 24884411 Query 189592 TCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATC 189651 || |||||||| ||||| | ||||||||| | ||||| ||||| || || || || Sbjct 24884410 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 24884351 Query 189652 TGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAAT 189711 ||||| || || | || | || || ||||| ||||| || || || ||||| ||||| Sbjct 24884350 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 24884291 Query 189712 CAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGT 189771 ||||| | ||||| | |||||||| ||| | || || ||||| || | |||||||| Sbjct 24884290 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 24884231 Query 189772 GCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTG 189831 ||| ||||||||||||||| ||||| || ||||| ||||||||||||||||| || || Sbjct 24884230 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 24884171 Query 189832 GCAGC 189836 || || Sbjct 24884170 GCTGC 24884166 Score = 536 bits (594), Expect = 2e-147 Identities = 729/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | || |||||| | | | || || ||||| ||||| || |||||||| Sbjct 24894024 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 24894083 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | |||||||| ||||||| |||| | || || ||| |||| || || || ||| Sbjct 24894084 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 24894143 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| ||||| ||| | || ||| || | || ||| ||||| | Sbjct 24894144 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 24894203 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || || || || || || ||||| || | | | || ||| | | ||||| ||||| Sbjct 24894204 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 24894263 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 || ||| | ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 24894264 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 24894323 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 190345 || ||||| |||||||| || ||||| || |||||| | ||||| |||||||| || || Sbjct 24894324 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 24894383 Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405 ||| || | | || ||||| ||||| ||| | |||||||| || |||||||||||||| Sbjct 24894384 TCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGT 24894442 Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465 | ||| || || || || || ||||| ||||| |||||||||| ||||| || || Sbjct 24894443 TTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGG 24894502 Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525 || |||||||| || || ||| |||||||||| || || || ||||| |||||| |||| Sbjct 24894503 CGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAA 24894562 Query 190526 CCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCA 190585 ||| || || |||||||| ||||| || | | || | || || || | || || || Sbjct 24894563 CCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCA 24894622 Query 190586 TGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGC 190645 ||| | || || || || ||| | | ||| || ||||| ||||| || || || Sbjct 24894623 TGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGC 24894682 Query 190646 ATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTC 190705 || || | || |||| ||||| || ||||| |||||||| || || || || ||||| Sbjct 24894683 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTC 24894742 Query 190706 TCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 ||||||||||||||||| || ||||| | ||||| |||||||||||||| ||||| Sbjct 24894743 CCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGT 24894802 Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825 || || | ||| | |||| | | || || | | || || ||||| ||||| || Sbjct 24894803 ACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACG 24894862 Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885 ||| |||||||| || ||||| || ||| | ||||| |||||||| || || |||||||| Sbjct 24894863 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 24894922 Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCA 190945 ||||| |||||||| ||||| || || ||| ||||| | ||| ||||| || ||||| Sbjct 24894923 CTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCA 24894982 Query 190946 ACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||||| ||| || |||| || || || || | ||| | || |||||||| Sbjct 24894983 GCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 24895036 >seq9 Length=18641908 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 189562 TATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTC 189621 ||||| || || | |||||||||||||| || |||||||| ||||| | |||||| Sbjct 2646509 TATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTC 2646568 Query 189622 TTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATG 189681 ||| | ||||| ||||| || || || || ||||| || || | || | || || ||| Sbjct 2646569 TTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATG 2646628 Query 189682 GCATTCAACCTCAA 189695 || ||||| || || Sbjct 2646629 GCTTTCAATCTAAA 2646642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634079904888000