Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq3 700 0.0 seq9 89.7 6e-13 >seq3 Length=38314702 Score = 700 bits (776), Expect = 0.0 Identities = 752/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | || ||||||||| |||| ||||||||||| || Sbjct 24885151 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 24885092 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | ||||| |||| ||||||| || ||| | ||||| || Sbjct 24885091 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 24885033 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||| ||||| || ||| ||||||| | | || |||||||| Sbjct 24885032 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 24884973 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 || ||||||||||| || ||||| |||| || || || | ||||| ||||| || Sbjct 24884972 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 24884913 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||||||||||| ||||||| ||| | |||||||| |||||||| | || | || Sbjct 24884912 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 24884853 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | || | || || |||||||| ||||||||||| | ||| Sbjct 24884852 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 24884793 Query 160931 CCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 || || ||||| || ||||| ||| ||||||||||| || |||||||| ||||| | || Sbjct 24884792 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 24884734 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | || ||| | | || ||| | |||||||| |||||||||||||||||| | || | Sbjct 24884733 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 24884674 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 | |||||||| |||||||| ||| |||| ||||||||||| || |||||||| ||||| | Sbjct 24884673 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 24884614 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | || |||||||| ||||| |||||||| ||||| ||||| || ||| || ||||||| Sbjct 24884613 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 24884554 Query 161170 GTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATG 161229 |||| |||| || ||| || | | ||||||||||| ||||| ||| || | | Sbjct 24884553 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGG 24884494 Query 161230 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCG 161289 |||||| ||||||||||| |||||||| || || || || || ||||||||||| || | Sbjct 24884493 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 24884434 Query 161290 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCG 161349 | || | ||||||||||| ||| || |||||||| ||||| || ||||||||| | | Sbjct 24884433 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 24884374 Query 161350 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCA 161409 | || |||||||| || || || ||||||||||| | ||| | || ||||| |||| Sbjct 24884373 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 24884314 Query 161410 ACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 161469 | || ||||||||||| |||||||| || | | ||| | || || || | || | Sbjct 24884313 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATA 24884254 Query 161470 CCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATG 161529 | |||||||| | | || |||||||| ||||||||||||||||||||||| ||||||| Sbjct 24884253 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 24884194 Query 161530 CTCACAACTTCCCTCTGGATCTCGCTGCT 161558 |||||||||||||||| || || |||||| Sbjct 24884193 CTCACAACTTCCCTCTAGACCTAGCTGCT 24884165 Score = 533 bits (590), Expect = 2e-146 Identities = 727/1011 (72%), Gaps = 8/1011 (1%) Strand=Plus/Plus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||||| | | | || || ||||| ||||| || |||||||| || | |||| Sbjct 24894034 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 24894093 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || || Sbjct 24894094 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 24894153 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTAC--CTTG--AGGGTGCTAATTTCCTTACAGCG 164072 |||| ||||| || | ||| |||| | ||| ||| ||| |||||| | || || Sbjct 24894154 GGTATACCCATGGATTGGCG---AGTTCCTATTTGGAAGGTTGC-AATTTCTTAACCGCA 24894209 Query 164073 GCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 164132 || || || || ||||| || | | | || ||| | | ||||| ||||| || || Sbjct 24894210 GCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAA 24894269 Query 164133 TCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTC 164192 | || ||||| || | | | ||||| ||| | || || || ||| ||||||| || || Sbjct 24894270 GCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTC 24894329 Query 164193 CACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTA 164252 || || |||| || || || ||||||||| | || || |||||| |||| || ||| Sbjct 24894330 CATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTT 24894389 Query 164253 GGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTT 164312 | || || || ||||| ||| | |||||||| || || ||||| ||||| ||| Sbjct 24894390 CAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTA 24894449 Query 164313 TTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCG 164372 ||||| || || || || |||||||| ||||||||||||| || ||||| || || Sbjct 24894450 TTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCA 24894509 Query 164373 GCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTC 164432 ||||| || ||||| || | ||| ||||||| || ||||| ||||| | ||||| || Sbjct 24894510 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 24894569 Query 164433 CATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCT 164492 ||||||||||| ||||| || | | || | ||||| || || ||||||||||| || Sbjct 24894570 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 24894629 Query 164493 ACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAG 164552 ||||| || || ||| | ||||| || ||||| ||||||| ||| || || | Sbjct 24894630 ACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 24894689 Query 164553 CCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATT 164612 || ||||||| ||||| ||||| || |||||||| || || ||||| ||||| || || Sbjct 24894690 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 24894749 Query 164613 TTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTC 164672 |||||| ||||||| |||||| |||||||| || ||||||||||| ||||| || ||| Sbjct 24894750 TTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTC 24894809 Query 164673 ATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTAT 164732 | || | |||| ||| ||||||| | |||| || || || || || ||||| ||| Sbjct 24894810 ACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTAT 24894869 Query 164733 GATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACG 164792 || || || || ||||| || | ||||| || ||||||||||||||||| ||||| || Sbjct 24894870 GACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACC 24894929 Query 164793 AAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACAC 164852 || || || || | || || || | ||||| |||||||| | || ||||| || Sbjct 24894930 AAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCAT 24894989 Query 164853 GAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| || |||| || ||||| ||||| || | || ||||| || ||| Sbjct 24894990 GAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 24895040 >seq9 Length=18641908 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 161298 ATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGG 161357 ||||||||||| ||| || |||||||| ||||| || ||||||||| | || || ||| Sbjct 2646524 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 2646583 Query 161358 CCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAA 161416 ||||| || || || ||||||||||| | ||| | || ||||| ||||| || || Sbjct 2646584 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAA 2646642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559327916100800