Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq9 390 2e-106 >seq9 Length=29411429 Score = 390 bits (432), Expect = 2e-106 Identities = 244/257 (95%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | Sbjct 10192540 GTACAAAGGGCAGGGACGTAGTCAACGCGAG-TTGATGACTCGCGCTTACTAGGCATT-C 10192483 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 10192482 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 10192423 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 10192422 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 10192363 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10192362 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC 10192303 Query 240 GGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 10192302 GGCCATAGTCCCTCTAA 10192286 Score = 152 bits (168), Expect = 8e-35 Identities = 97/104 (93%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAG 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 10152536 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAG 10152595 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA 160 ||||||||| |||||||||||||| ||| ||||||||||| || Sbjct 10152596 ATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATCCA 10152639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999912580