Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10 425 2e-116 seq9 181 4e-43 >seq10 Length=24717764 Score = 425 bits (470), Expect = 2e-116 Identities = 265/284 (93%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 400 GTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT 459 |||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 996242 GTAATCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGT 996301 Query 460 GTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATC 519 ||||||||| | ||||||||||||||||||||||||| ||||| | |||||| |||| Sbjct 996302 GTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGAGAACCGC--AAGGTGCATCATC 996359 Query 520 GACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG 579 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 996360 GACCGATCCTGATGTCTTCGGATGGATTTGAGTATGAGCATAGCTGTTGGGACCCGAAAG 996419 Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 996420 ATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 996479 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 996480 GTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 996523 >seq9 Length=29411429 Score = 181 bits (200), Expect = 4e-43 Identities = 211/281 (75%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 25117554 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 25117613 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 |||| | | ||| || ||| ||| | || || | || | || ||||| | | Sbjct 25117614 AACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCGGG-GGCCGCACCGCTGGC 25117672 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | | |||||| | | || || || |||| ||||| | || | ||||||||||||||| Sbjct 25117673 CAACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACACCTATCGGGACCCGAAAGATG 25117732 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 | ||||||||||||| || ||||||| |||||||||||||||||||||| |||| | Sbjct 25117733 GCGAACTATGCCTGAGCGCGGCGAAGCCAAAGGAAACTCTGGTGGAGGCTCGAAGCGATA 25117792 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||| | ||||| | |||||||||||||||| Sbjct 25117793 CTGACGTGCAAATTGTTCGTCTGACTTGGGTATAGGGGCGA 25117833 Score = 178 bits (196), Expect = 5e-42 Identities = 216/285 (76%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| |||||||||||||||||| |||| | ||||| ||||| | Sbjct 8685590 CGACCCGTCTTGAGACACGGACCAAGGAGTCTGACATGCCTACGAGTCGATGGGTTCTGG 8685531 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 |||| | | ||| || ||| ||| ||| || || || | | ||| | ||| || Sbjct 8685530 AACCTGGGATGCGCAAGGAAGCTGAC--GAG-TGAGAGGCCCTCGCGGGCCGTACCGCCG 8685474 Query 521 ACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAA 578 |||| ||| || |||| | | || ||||||| ||||| |||| ||||||||||| Sbjct 8685473 GCCGACCCTAAT--CTTCTGTAAAGGGTTTGAGTTGGAGCACGCCTGTCGGGACCCGAAA 8685416 Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| Sbjct 8685415 GATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGC 8685356 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | ||| |||||||||| | ||| | |||||||||||| ||| Sbjct 8685355 GATACTGACGTGCAAATCATTTGTCTGACTTGGGTATAGGGCCGA 8685311 Score = 141 bits (156), Expect = 4e-31 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 8684886 TGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTG 8684945 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||||||||| |||| | ||| ||| ||||||| | ||| | |||||||||||| Sbjct 8684946 GTGGAGGCTCGAAGCGATACTGACGTACAAATCGTTTGTCTGACTTGGGTATAGGG 8685001 Score = 98.7 bits (108), Expect = 4e-18 Identities = 118/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84 ||| || || || ||||| |||||||||||||| ||| | || ||| |||||| | Sbjct 8684355 TGAGGCGCCGTCAACGAGATTGGTTGTTTGGGAATGTAGCCCAAATCGGGCGGTAAACTC 8684414 Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 | || || |||||||| | | ||||| ||||||| ||||| | || |||||||| Sbjct 8684415 CGTCCAAGGCTAAATACAG-CGAGAGATCGATAGCAAACAAGCACCACGAGGGAAAGATG 8684473 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAAT 183 |||| || ||| ||||||||| |||||| | |||||| Sbjct 8684474 AAAATGACATTGAAAAGAGAGTCAAAAAGTGCTTGAAAT 8684512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999742600