Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq8 342 1e-91 seq1 268 2e-69 seq9 114 3e-23 seq10 93.3 9e-17 seq2 73.4 8e-11 >seq8 Length=28014461 Score = 342 bits (378), Expect = 1e-91 Identities = 289/353 (82%), Gaps = 7/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 1720831 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 1720772 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1720771 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1720712 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||||| | | || | || Sbjct 1720711 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 1720652 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 1720651 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 1720592 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || ||||||||||||||||||||||||| |||||| || ||||| || | | Sbjct 1720591 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 1720532 Query 303 ACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1720531 CGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 1720479 >seq1 Length=42845077 Score = 268 bits (296), Expect = 2e-69 Identities = 285/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 32808650 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 32808709 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 32808710 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 32808769 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | | || Sbjct 32808770 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 32808821 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 32808822 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 32808881 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 32808882 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 32808941 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 32808942 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 32809001 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 32809002 CTTCGACATGGTTCTC 32809017 >seq9 Length=29411429 Score = 114 bits (126), Expect = 3e-23 Identities = 160/226 (71%), Gaps = 34/226 (15%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||| || |||||||||||||| ||||| ||| ||||| ||||||||||||||||||||| Sbjct 17370233 GAGATAGAGCCCAAATCGTTACACCTTTTGTGTGGGTCAGAACTTACCCGACAAGGAATT 17370174 Query 107 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT 166 |||||||||||||| || ||||| || ||||||| |||| | || Sbjct 17370173 TCGCTACCTTAGGA---------------CCACCGTTCACCGGGGCTTCAGTTGCCGACT 17370129 Query 167 TCGATTGCTCT-AACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATA 225 || || | | ||| | ||| | ||||| | || || || ||| ||| Sbjct 17370128 ----TTCCTGTCATCAGTT---CTTTAACTTCCGGTACTGGACA---------TCCCATA 17370085 Query 226 CATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTT--GGTAAACAG 269 ||| ||||||||||| || || || ||| ||||| ||||||||| Sbjct 17370084 CATGATCTTGCGACTTTGCGGAGACATGTTTTTTTTAGGTAAACAG 17370039 >seq10 Length=24717764 Score = 93.3 bits (102), Expect = 9e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 4528411 GCATCTTTACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 4528470 Query 67 ACGCCTTTCGTGCGGGTCGGAACT 90 |||||||||||||||||||||||| Sbjct 4528471 ACGCCTTTCGTGCGGGTCGGAACT 4528494 >seq2 Length=21549876 Score = 73.4 bits (80), Expect = 8e-11 Identities = 74/94 (79%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 ||||| | ||| | ||| ||||||| || ||||||| ||||| || || |||||||| Sbjct 11820897 ACCTTTCGGCATTAGACAGCCGTCAGCCCCCATACATCATCTTGTGATTTTGCAGAAACT 11820956 Query 252 TGTGTTTTTGGTAAA--CAGTCGCT-TGGGCCTA 282 ||||||||||||||| |||| || ||||||| Sbjct 11820957 TGTGTTTTTGGTAAAAGGAGTCACTCAGGGCCTA 11820990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062399872512