Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq10 214 4e-53 seq8 203 7e-50 seq7 203 7e-50 seq6 178 3e-42 seq1 145 2e-32 seq3 122 2e-25 seq4 86.0 1e-14 >seq10 Length=24717764 Score = 214 bits (236), Expect = 4e-53 Identities = 150/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 16361409 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 16361351 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| ||| || | Sbjct 16361350 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACTAGCT 16361291 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 16361290 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 16361241 Score = 140 bits (154), Expect = 7e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||| | |||| ||||||| ||||||||| Sbjct 9601242 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGTGATATTG-CTGGATCGGGCTTTCGC 9601299 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| ||||| || | ||| || ||| | Sbjct 9601300 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTTCGGGCAGTGCCTAAGTCCT 9601359 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 |||||| |||||||||| |||| || || | ||| | | |||||| |||| |||| Sbjct 9601360 AGTGTGGCTGATCATCCGAAAAGACTAGCTAAGCATCATTGGCTTGGTCAGCCTTTAC 9601417 >seq8 Length=28014461 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 12549121 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 12549178 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 12549179 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 12549238 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||| Sbjct 12549239 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 12549298 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 12549299 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 12549338 Score = 141 bits (156), Expect = 2e-31 Identities = 113/135 (84%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG 91 ||||||||| || ||||||||||||||||||| || ||||||||||||||||||||| Sbjct 4765059 GCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCG 4765001 Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACG 151 ||||||||||| ||||| ||||| | ||||| |||||| |||||| |||||| ||| Sbjct 4765000 TAGGAGTCTGGGTCGTGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGACCAACTACT 4764941 Query 152 GATCGTCGCCTTGGT 166 ||| | |||||||| Sbjct 4764940 GATTATTGCCTTGGT 4764926 >seq7 Length=28646061 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 25373429 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 25373486 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 25373487 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 25373546 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||| Sbjct 25373547 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 25373606 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 25373607 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 25373646 >seq6 Length=36134596 Score = 178 bits (196), Expect = 3e-42 Identities = 169/211 (80%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 23003584 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 23003527 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| ||||| |||||||||| ||| | ||||| || || ||||||||| || Sbjct 23003526 CCATTGTCCAAGATTCCTCACTGCTGCC-CCCCTGAGAGTCCGGGCCATGTCTCAGTCCC 23003468 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||| Sbjct 23003467 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCC 23003408 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATC 209 |||||||| ||||| | || ||||||||| Sbjct 23003407 GACCAACTACCTAATACTACGCAGGCTCATC 23003377 >seq1 Length=42845077 Score = 145 bits (160), Expect = 2e-32 Identities = 112/133 (84%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 55 TCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAG 114 ||||||||||||||| |||||||||||||||| ||||| |||||| || ||||||||||| Sbjct 4880899 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 4880840 Query 115 TTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174 | |||||||| |||||||||| ||||||| || | ||| | | |||||| |||| || Sbjct 4880839 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 4880780 Query 175 ACCTCACCAACTA 187 ||| |||||||| Sbjct 4880779 ACCCGACCAACTA 4880767 Score = 82.4 bits (90), Expect = 2e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 50 GGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 109 ||||||||||||||| || |||||||||||||||||||||||||||||| | |||||| Sbjct 38103705 GGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTGT 38103646 >seq3 Length=24378308 Score = 122 bits (134), Expect = 2e-25 Identities = 84/94 (89%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 19841221 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 19841279 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 122 |||||||||||||| |||||||||||| |||||| Sbjct 19841280 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 19841313 Score = 89.7 bits (98), Expect = 1e-15 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 31 CGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCC 90 |||| |||| ||||||| |||||||||||||||||||| |||||||||||||||| ||| Sbjct 21250527 CGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCC 21250585 Query 91 GTAGGAGTC 99 || |||||| Sbjct 21250586 GTGGGAGTC 21250594 >seq4 Length=20076173 Score = 86.0 bits (94), Expect = 1e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||||| |||||| ||| |||| ||| |||||| ||| ||| |||||||||||| Sbjct 15730113 GATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACTA 15730172 Query 188 GCTAATC 194 ||||||| Sbjct 15730173 GCTAATC 15730179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071999871360