Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq8 241 5e-61 seq2 154 5e-35 seq1 104 8e-20 seq7 75.2 4e-11 >seq8 Length=28014461 Score = 241 bits (266), Expect = 5e-61 Identities = 343/476 (72%), Gaps = 30/476 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 1719558 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 1719499 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 1719498 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 1719439 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 1719438 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 1719379 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 || | |||||||| |||||||||||||||||||| | || | | Sbjct 1719378 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCGTTC-CCT 1719324 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 1719323 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GA 1719267 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACTA 483 | | || ||| |||| || | ||| || || ||||||| || ||| Sbjct 1719266 GATCACT---------TTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTA 1719216 Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 ||||||| ||| | ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 1719215 TTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGT 1719156 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 1719155 CACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 1719100 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || ||||||| || |||||||||| ||| | ||||| ||||||||||||||||||| || Sbjct 10944717 CACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACCGT 10944776 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 ||| |||||||||||||| |||||||||||| ||| Sbjct 10944777 ACTACATCGCTATCGGTCACCCAGGAGTATTTAGCCTT 10944814 >seq2 Length=21549876 Score = 154 bits (170), Expect = 5e-35 Identities = 347/504 (69%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 2265761 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 2265820 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| ||||| ||| || ||||||| | | ||| ||||||||||||||||| | Sbjct 2265821 TGAAATAGATTTCACGGAAAAACAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 2265880 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 2265881 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 2265940 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | | ||||||||||| ||||| |||||| | | |||||||| || | | | | Sbjct 2265941 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAG-GAAGAACGT 2265998 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380 | | ||| || || | | | || |||| || | || |||| || | | Sbjct 2265999 A---AATCTTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 2266051 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTACCTAAAAG 438 || | ||||| | | ||| | | ||||| ||||||| | || || | Sbjct 2266052 CATTTC---CTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGTGC---GCCC 2266105 Query 439 GCACTTCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCC 493 || | || |||| |||| |||||| ||| | | ||| || ||||| ||||||| Sbjct 2266106 GCGC-TCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAAGTTCTCTATTGCACTCCC 2266164 Query 494 CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAG 553 || ||||| |||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 2266165 CGATTGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTATGCTATCGGTCATTGAGGAA 2266224 Query 554 TATTTAGGCTTAACGGGTGGTCCC 577 || ||||||||| |||||||||| Sbjct 2266225 TACTTAGGCTTAGAGGGTGGTCCC 2266248 >seq1 Length=42845077 Score = 104 bits (114), Expect = 8e-20 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 32888125 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 32888066 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTC 248 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| Sbjct 32888065 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTC 32888014 >seq7 Length=28646061 Score = 75.2 bits (82), Expect = 4e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 467 CATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 || ||||||| || |||||||||| ||| | ||||| ||||| |||||||||||| || Sbjct 17994479 CACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTTACCTTTCCCTCATGGC 17994538 Query 527 ACTTGTCCGCTATCGGTCACC 547 ||| | |||||| |||||| Sbjct 17994539 ACTACTTTGCTATCAGTCACC 17994559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817599781888