Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq8 199 1e-48 seq2 102 2e-19 seq1 84.2 5e-14 seq7 77.0 8e-12 >seq8 Length=28014461 Score = 199 bits (220), Expect = 1e-48 Identities = 306/421 (73%), Gaps = 19/421 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 1719492 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 1719436 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 1719435 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 1719380 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 1719379 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 1719322 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 1719321 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 1719262 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 1719261 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 1719202 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 1719201 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 1719143 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 1719142 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 1719083 Query 420 G 420 | Sbjct 1719082 G 1719082 Score = 113 bits (124), Expect = 1e-22 Identities = 90/107 (84%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || |||||||||||| |||||||||||| || Sbjct 10944718 ACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTCACCTTTCCCTCACCGT 10944776 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||| || |||||||||| ||| |||||||||||||| | | ||| Sbjct 10944777 ACTACATCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGG 10944823 >seq2 Length=21549876 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||| | ||| ||| |||||||| | ||||||||||| Sbjct 2266122 ACTGATTGTTCGCATCGGATCTCAAGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 2266180 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || |||||||||| | || | || |||| ||| |||| Sbjct 2266181 CACCTTTCCCTCACGGTACTTGTATGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 2266240 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 2266241 GTGGTCCCCC 2266250 >seq1 Length=42845077 Score = 84.2 bits (92), Expect = 5e-14 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || | Sbjct 15395077 GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTC 15395136 Query 248 GGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||||| |||||| || | |||||||| | ||||||||||| ||| || ||| Sbjct 15395137 CCCTCCCATTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTG-GGG 15395195 Query 305 GTTCTTTTCGCCTTTCCCTCACGG 328 ||||||||| |||||||||||||| Sbjct 15395196 GTTCTTTTCACCTTTCCCTCACGG 15395219 >seq7 Length=28646061 Score = 77.0 bits (84), Expect = 8e-12 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| || Sbjct 17994480 ACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTTACCTTTCCCTCATGGC 17994538 Query 330 ACTAGTTCACTATCGGTCA 348 |||| || ||||| |||| Sbjct 17994539 ACTACTTTGCTATCAGTCA 17994557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241599851008