Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq10 197 3e-48 seq8 132 1e-28 seq7 132 1e-28 seq1 113 9e-23 seq6 111 3e-22 seq3 109 1e-21 >seq10 Length=24717764 Score = 197 bits (218), Expect = 3e-48 Identities = 228/305 (75%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 16361404 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 16361345 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | | ||||| ||| Sbjct 16361344 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACTAGCTACTGAT 16361285 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 16361284 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 16361225 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | | ||||||| Sbjct 16361224 GCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGATATTAGCAAC 16361181 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 ||||||| ||| || | ||| || || ||||| || ||| ||||||||||||| || Sbjct 16361180 TGTTTCCAGTTGTTTTTTCCCTCCCAAGGGTAGGTT-CTTACGCGTTACTCACCCGTTCG 16361122 Query 300 CCACT 304 ||||| Sbjct 16361121 CCACT 16361117 Score = 87.8 bits (96), Expect = 4e-15 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||| Sbjct 9601282 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTTC 9601341 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||| ||| || ||||| | |||||| | ||| || || | |||| ||| | || Sbjct 9601342 GGGCAGTGCCTAAGTCCTAGTGTGGCTGATCATCCGAAAAGACTAGCTAAGCATCATTGG 9601401 Query 127 CTTGGT 132 |||||| Sbjct 9601402 CTTGGT 9601407 >seq8 Length=28014461 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 12549161 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 12549220 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 12549221 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 12549280 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| | |||||||||||||| Sbjct 12549281 CTTGGTCAGCCTTTACCCGACCAACTACCTAAT 12549313 Score = 116 bits (128), Expect = 7e-24 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||||| || || ||||||||||||||||||||| Sbjct 4765057 GGCATTGCTCCGTCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAG 4764998 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||| ||||| ||||||| | ||| || | || ||||| || || |||| ||| Sbjct 4764997 GAGTCTGGGTCGTGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGACCAACTACTGAT 4764938 Query 121 CGTCGGCTTGGT 132 | | |||||| Sbjct 4764937 TATTGCCTTGGT 4764926 >seq7 Length=28646061 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 25373469 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 25373528 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 25373529 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 25373588 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| | |||||||||||||| Sbjct 25373589 CTTGGTCAGCCTTTACCCGACCAACTACCTAAT 25373621 >seq1 Length=42845077 Score = 113 bits (124), Expect = 9e-23 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 21 TCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 80 || |||||||| ||| || ||||||||||||| ||||| |||||| |||||||||||||| Sbjct 4880899 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 4880840 Query 81 TCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATT 140 ||||| |||||| | ||| || || || |||| ||| | |||||||| || || Sbjct 4880839 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 4880780 Query 141 ATCTCACCAACTACC 155 | | |||||||||| Sbjct 4880779 ACCCGACCAACTACC 4880765 Score = 77.0 bits (84), Expect = 6e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 16 GGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGT 75 || |||| ||||||| | || || ||||||||||||||||||||||||||| |||||||| Sbjct 38103705 GGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTGT 38103646 >seq6 Length=36134596 Score = 111 bits (122), Expect = 3e-22 Identities = 117/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || || |||||||||| ||| || |||| Sbjct 23003544 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCTCACTGCTGCCCCCCTGAG-AGTCC 23003486 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 23003485 GGGCCATGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 23003426 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| | |||||||||||||| Sbjct 23003425 CTTGGTCAGCCTTTACCCGACCAACTACCTAAT 23003393 >seq3 Length=24378308 Score = 109 bits (120), Expect = 1e-21 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 19841226 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 19841285 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATG 88 ||||||||||||||||||||||||| || Sbjct 19841286 GAGTCTGGGCCGTGTCTCAGTCCCAGTG 19841313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998399880192