Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq8 208 2e-51 seq1 176 1e-41 seq2 161 2e-37 seq10 141 2e-31 seq6 77.0 8e-12 >seq8 Length=28014461 Score = 208 bits (230), Expect = 2e-51 Identities = 298/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 1720108 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1720049 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 1720048 GAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 1719989 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || ||| | | | | ||| ||||| || || | | Sbjct 1719988 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGGTTGCTTC-CCTCTAAGGC 1719933 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 1719932 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 1719877 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| || |||| | || || ||||||||||||||||||||||| ||| Sbjct 1719876 CCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAG 1719818 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||| Sbjct 1719817 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTG 1719758 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 1719757 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1719709 >seq1 Length=42845077 Score = 176 bits (194), Expect = 1e-41 Identities = 157/194 (81%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| || |||| | || || || Sbjct 488755 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCA 488698 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||| |||| |||||||||| | || |||||||||| ||||| Sbjct 488697 GTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTT 488638 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | |||| |||||| ||||||| || |||||||||||||||| ||||| ||| Sbjct 488637 TGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGG 488578 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 488577 CTGTTTCCCTCTCG 488564 Score = 136 bits (150), Expect = 9e-30 Identities = 146/192 (76%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 8569388 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 8569444 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||| || |||| ||||||||||||||||||||| |||| |||| |||| || Sbjct 8569445 GAGCTATTATGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTACTGGCTGTCATCG 8569504 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| |||| ||| | ||||||| ||||||| | |||||||| | Sbjct 8569505 CTCGATCACTTCCTTTTTCACTAAGTGATTGCTTAGGGACCTTAGCATACGATCTGGGTT 8569564 Query 389 GTTTCCCTCTCG 400 ||||| |||||| Sbjct 8569565 GTTTCGCTCTCG 8569576 >seq2 Length=21549876 Score = 161 bits (178), Expect = 2e-37 Identities = 149/189 (79%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| | || |||| ||||| | ||||| |||| || || |||||||||| Sbjct 2265486 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGTGCTAGACCAGTGAG 2265545 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||| Sbjct 2265546 CTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTC 2265605 Query 332 CTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391 ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||||| Sbjct 2265606 GATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTT 2265665 Query 392 TCCCTCTCG 400 ||||||||| Sbjct 2265666 TCCCTCTCG 2265674 >seq10 Length=24717764 Score = 141 bits (156), Expect = 2e-31 Identities = 111/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327 |||| ||| ||||||||||| |||| |||||||||| | || |||||||||| ||||| Sbjct 15717376 TGAGATATAACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTT 15717435 Query 328 GCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGC 387 ||| | |||| |||||| ||||||| || |||||||||||||||| ||||| |||| Sbjct 15717436 GCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGC 15717495 Query 388 TGTTTCCCTCTCG 400 ||||||||||||| Sbjct 15717496 TGTTTCCCTCTCG 15717508 >seq6 Length=36134596 Score = 77.0 bits (84), Expect = 8e-12 Identities = 75/95 (79%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 305 AAGCCAACCTCCTGGTTGTCTACG--CAACTCCACATCCTTTCCCACTGAGTCACCACTT 362 ||||| ||||| |||||||| || ||| ||| |||||| ||||| ||| | ||| Sbjct 11723950 AAGCCCACCTCTTGGTTGTCATCGTTCAAT--CACTTCCTTTTCCACTAAGTGATTGCTT 11724007 Query 363 AGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTC 397 |||||||||||| | |||||| |||||||||||| Sbjct 11724008 AGGGGCCTTAGCGTACGATCTGTGCTGTTTCCCTC 11724042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177599858688