Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq8 118 9e-25 seq7 118 9e-25 seq6 118 9e-25 seq9 100 2e-19 seq11 96.9 3e-18 >seq8 Length=28014461 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 12548192 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 12548250 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 12548251 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 12548310 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 12548311 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 12548350 >seq7 Length=28646061 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 25372500 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 25372558 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 25372559 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 25372618 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 25372619 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 25372658 Score = 87.8 bits (96), Expect = 1e-15 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| |||||||| | | ||| |||| ||| |||||||| ||| Sbjct 16307532 TTTTTGGAGTTAGCTCACCCTCGCGAGATCGCGACCCTTTGTCCCGCCCATTGTAGCACG 16307591 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| |||||||| ||||| |||||| | |||||| | ||||||||||| | Sbjct 16307592 TGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGGCCTCATCCTCTCCTTCCTCCGGCT 16307651 Query 156 T 156 | Sbjct 16307652 T 16307652 >seq6 Length=36134596 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 23004604 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 23004546 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 23004545 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 23004486 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 23004485 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 23004446 Score = 109 bits (120), Expect = 5e-22 Identities = 121/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| ||||||| |||| | | ||||| || ||| || || || | | Sbjct 23005460 CGAGTTGCAGAGAACAATCCTAACTAAGGCAATCTTTCCGG-ATTCGCCCCGTCTTACAG 23005402 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 23005401 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 23005342 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 23005341 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 23005302 >seq9 Length=29411429 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||| ||| Sbjct 18151857 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTTGCGA 18151916 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 18151917 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 18151976 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| ||||||||||||| || Sbjct 18151977 GATGACTTGGCCTCATCCTCACCTTCCTCCGGCTT 18152011 Score = 80.6 bits (88), Expect = 2e-13 Identities = 116/161 (72%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| | | ||| || ||| | | ||||| || ||| |||| ||| | | Sbjct 10805206 CGAGTTGCATAGAATAATTCGAACTGAGGCAATCTTTCCGG-ATTTGCTCTGCCTTACAG 10805148 Query 62 GTTGGCGGCCCTCTGTATGTACCAT-TGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || ||| ||| | |||| ||| ||||||| |||| |||||||| |||| Sbjct 10805147 CCTTGCTTCCCATTGTCATTGCCATATGTCGCACGTGTGTGGCCCAGCCCATAAGTGCCA 10805088 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||| ||||||||||||||||||| || | |||| Sbjct 10805087 TGCGGACTTGATGTCATCCCCACCTTCCTCCAGTATCTCAC 10805047 >seq11 Length=26703665 Score = 96.9 bits (106), Expect = 3e-18 Identities = 109/145 (75%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||||||| ||||||| | | | | ||||| || ||| ||||| ||| | | Sbjct 16459092 GAGTTGCAGAGAACAATCCAAATTGAGGCAATCTTTCCGG-ATTTGCTCCGCCTTACAGC 16459150 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | || ||| ||| | |||||||| ||||||| |||| ||||||||||||||| Sbjct 16459151 CTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATG 16459210 Query 123 AGGACTTGACGTCATCCCCACCTTC 147 |||||||||||||||||||||||| Sbjct 16459211 CGGACTTGACGTCATCCCCACCTTC 16459235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415999951640