Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq9 134 1e-29 seq3 77.0 3e-12 >seq9 Length=29411429 Score = 134 bits (148), Expect = 1e-29 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 10191649 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 10191708 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 10191709 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 10191766 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 10191767 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 10191824 >seq3 Length=24378308 Score = 77.0 bits (84), Expect = 3e-12 Identities = 76/97 (78%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 94 TTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTC 153 ||||||| ||| ||| | ||| || |||||||| |||| ||| ||||||||| | Sbjct 20504519 TTCTATTGTGTTGGTATTCGGGATCGGA-GTAATGATTAATAGGGACAGTCGGGGGCATT 20504461 Query 154 AGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||||| || |||| ||||||||||||||||||||| Sbjct 20504460 CGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 20504424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999940480