Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq8 250 4e-64 seq1 250 4e-64 seq4 208 1e-51 seq11 77.0 5e-12 >seq8 Length=28014461 Score = 250 bits (276), Expect = 4e-64 Identities = 220/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 1721570 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 1721511 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 1721510 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 1721451 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 1721450 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 1721391 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 1721390 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 1721331 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 1721330 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 1721298 >seq1 Length=42845077 Score = 250 bits (276), Expect = 4e-64 Identities = 220/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 5207639 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 5207580 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 5207579 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 5207520 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 5207519 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 5207460 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 5207459 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 5207400 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 5207399 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 5207367 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 32807955 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 32808014 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 32808015 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 32808074 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 32808075 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 32808134 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 32808135 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 32808194 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 32808195 AGTCGACATCG 32808205 >seq4 Length=20076173 Score = 208 bits (230), Expect = 1e-51 Identities = 201/259 (78%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| |||||| |||||| ||| |||| ||| ||||| | | | | |||| Sbjct 17655333 CTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGTT-TACCGTAGGCAC 17655391 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 | ||||||| | |||| ||||||||||||| ||||| ||| || ||||| Sbjct 17655392 GATAACTGGTAC-----------GTCCTTCCCGGTCCTCTCATACTAGGGAAAGGTCCTC 17655440 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 |||| || |||||||| |||||| ||||||||||||||| |||||||||||||||| Sbjct 17655441 TCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCA 17655500 Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 |||| ||| || | ||||||||||||||||||||||||||| ||| || |||| ||||| Sbjct 17655501 GCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCACCTACAGCTCCAGG 17655560 Query 257 ATGAGACGAGCCGACATCG 275 | || |||||||||||| Sbjct 17655561 TGGCGAAGAGCCGACATCG 17655579 >seq11 Length=26703665 Score = 77.0 bits (84), Expect = 5e-12 Identities = 96/129 (74%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| |||| |||| |||||| ||||| ||| |||| ||| ||||| Sbjct 6858226 GAGGTGGGCTTACTACTTATATGCTTTCAGCAGCTATCCTCTCCGTACTTGGCTACCCAG 6858167 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | | |||| | || |||| ||||| |||| ||| |||||||||||||||| Sbjct 6858166 CGTTTACCGTAGGCACGATAATTGGTACACCAAAGGTGCATCCTTCCCGGTCCTCTCGTA 6858107 Query 121 CTAAGGACA 129 || |||||| Sbjct 6858106 CT-AGGACA 6858099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799909232