Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq10 210 5e-52 seq8 174 4e-41 seq7 174 4e-41 seq6 152 1e-34 seq3 138 3e-30 seq1 136 1e-29 >seq10 Length=24717764 Score = 210 bits (232), Expect = 5e-52 Identities = 161/191 (84%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 16361435 TTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 16361376 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 16361375 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 16361316 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||| ||||| |||| |||||| ||| || ||| || | ||| Sbjct 16361315 GGCTGATCATCCTCTCGGACTAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 16361256 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 16361255 ACTAGCTAATC 16361245 Score = 125 bits (138), Expect = 2e-26 Identities = 134/176 (76%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||| | || |||| ||| ||||| ||||| Sbjct 9601242 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGTGATATTGCTGGATCGGGCTTTCGCCC 9601301 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| ||||| || | ||| || ||| | || Sbjct 9601302 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTTCGGGCAGTGCCTAAGTCCTAG 9601361 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTAC 177 |||||||| |||||| |||| ||||| | ||| | | || ||| ||| |||| Sbjct 9601362 TGTGGCTGATCATCCGAAAAGACTAGCTAAGCATCATTGGCTTGGTCAGCCTTTAC 9601417 >seq8 Length=28014461 Score = 174 bits (192), Expect = 4e-41 Identities = 155/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 12549121 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 12549180 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 12549181 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 12549240 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||| Sbjct 12549241 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 12549300 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 12549301 CCAACTACCTAAT 12549313 Score = 143 bits (158), Expect = 7e-32 Identities = 112/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34 GCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGT 93 ||||||| ||| | |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct 4765059 GCGGCATTGCTCCGTCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGT 4765000 Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153 |||||||||| ||||| ||||| | ||||| |||| || |||||| |||||| ||| | Sbjct 4764999 AGGAGTCTGGGTCGTGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGACCAACTACTG 4764940 Query 154 ATCGTCGCCTAGGT 167 || | |||| ||| Sbjct 4764939 ATTATTGCCTTGGT 4764926 >seq7 Length=28646061 Score = 174 bits (192), Expect = 4e-41 Identities = 155/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 25373429 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 25373488 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 25373489 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 25373548 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||| Sbjct 25373549 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 25373608 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 25373609 CCAACTACCTAAT 25373621 >seq6 Length=36134596 Score = 152 bits (168), Expect = 1e-34 Identities = 151/193 (78%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 23003584 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 23003525 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| ||||| |||||||||| ||| || |||| || || ||||||||| |||| Sbjct 23003524 ATTGTCCAAGATTCCTCACTGCTGCCCCCCTGAG-AGTCCGGGCCATGTCTCAGTCCCAG 23003466 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||| Sbjct 23003465 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA 23003406 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 23003405 CCAACTACCTAAT 23003393 >seq3 Length=24378308 Score = 138 bits (152), Expect = 3e-30 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 19841195 TTAACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 19841254 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 | | || |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 19841255 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 19841313 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 33 CGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCG 92 |||| || |||| ||| ||||| |||||||||| ||| |||||||||||||||| |||| Sbjct 21250527 CGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCG 21250586 Query 93 TAGGAGTC 100 | |||||| Sbjct 21250587 TGGGAGTC 21250594 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 100 CTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 |||| |||||||||||| |||||||||||| |||||||||| ||||||||| Sbjct 17552480 CTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA 17552530 >seq1 Length=42845077 Score = 136 bits (150), Expect = 1e-29 Identities = 113/137 (82%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 53 CTTG-CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTC 111 |||| |||||||||| ||| |||||||||||||||| ||||| |||||| || ||||||| Sbjct 4880903 CTTGTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTC 4880844 Query 112 TCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGC 171 ||||| |||||||||||| |||||| |||||||||| | ||| | | || ||| || Sbjct 4880843 TCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGC 4880784 Query 172 CATTACCCCGCCAACTA 188 | |||||| ||||||| Sbjct 4880783 CTTTACCCGACCAACTA 4880767 Score = 82.4 bits (90), Expect = 2e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 51 GGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 110 ||||| ||||||||| | || |||||||||||||||||||||||||||||| | |||||| Sbjct 38103705 GGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTGT 38103646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222399853312