Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq8 260 4e-67 seq7 260 4e-67 seq10 217 4e-54 seq6 205 3e-50 seq3 129 2e-27 seq1 111 5e-22 >seq8 Length=28014461 Score = 260 bits (288), Expect = 4e-67 Identities = 256/327 (78%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 12549313 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 12549254 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 12549253 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 12549194 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 12549193 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 12549134 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 12549133 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 12549074 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 12549073 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 12549014 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||||||||||| |||||| ||| Sbjct 12549013 CT-AGGCGTAAAGGGCACGTAGGCGGT 12548988 Score = 129 bits (142), Expect = 2e-27 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 195 ACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254 |||||||| | |||||||| | || ||||| |||| || ||| | | ||||| ||| Sbjct 4764926 ACCAAGGCAATAATCAGTAGTTGGTCTAAGAGGACGATCAGCTACACTAGGACTGAAACA 4764985 Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 || ||| |||||||||||||||||||||||||||| || |||||||||| ||||||||| Sbjct 4764986 CGACCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCACAATGGGCGAAAGCCTGA 4765045 Query 315 TGCAGCAACGCCGC 328 | ||||| ||||| Sbjct 4765046 CGGAGCAATGCCGC 4765059 >seq7 Length=28646061 Score = 260 bits (288), Expect = 4e-67 Identities = 256/327 (78%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 25373621 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 25373562 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 25373561 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 25373502 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 25373501 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 25373442 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 25373441 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 25373382 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 25373381 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 25373322 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||||||||||| |||||| ||| Sbjct 25373321 CT-AGGCGTAAAGGGCACGTAGGCGGT 25373296 Score = 95.1 bits (104), Expect = 4e-17 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| ||||||||||||||||||| || ||| || ||||||||||||||| | Sbjct 16308316 CGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGA 16308257 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||||||| || |||||||| || | ||||| Sbjct 16308256 -TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 16308221 >seq10 Length=24717764 Score = 217 bits (240), Expect = 4e-54 Identities = 167/198 (84%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| Sbjct 16361238 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTAGT 16361297 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 16361298 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 16361357 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 16361358 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 16361417 Query 340 AGGCCTTCGGGTCGTAAA 357 ||||| |||||||| || Sbjct 16361418 AGGCCCACGGGTCGTCAA 16361435 Score = 145 bits (160), Expect = 2e-32 Identities = 179/243 (74%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 185 GTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGG 244 |||| |||| |||||| | | ||| |||| || || ||||| |||||| | | Sbjct 9601417 GTAAAGGCTGACCAAGCCAATGATGCTTAGCTAGTCTTTTCGGATGATCAGCCACACTAG 9601358 Query 245 AACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGC 304 ||| || ||| | || |||||| ||||| |||||||||||||||| ||| ||||||||| Sbjct 9601357 GACTTAGGCACTGCCCGAACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGC 9601298 Query 305 AAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCT 362 |||||| ||| |||||| | |||||| || ||||| | | | | | |||||||||| Sbjct 9601297 GAAAGCCCGATCCAGCAATATCACGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCT 9601238 Query 363 GTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCA 420 || | | | ||| ||||| ||| ||||| |||||| ||||||||| ||||| | Sbjct 9601237 TTCTCCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGCCTCGGCTAACTCCGTGCTA 9601178 Query 421 GCA 423 ||| Sbjct 9601177 GCA 9601175 >seq6 Length=36134596 Score = 205 bits (226), Expect = 3e-50 Identities = 242/322 (75%), Gaps = 7/322 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| ||||| |||| |||||| | | ||| |||| | || || Sbjct 23003393 ATTAGGTAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 23003452 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| ||||||||| || || |||| | ||| |||||||||| || Sbjct 23003453 ATGATCAGCCACACTGGGACTGAGACATGGCCCGGACTCTCAGGGG-GGCAGCAGTGAGG 23003511 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 23003512 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 23003571 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || || | || ||||| ||| ||||| ||||||| Sbjct 23003572 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCCC 23003631 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAA-TACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||||| |||||||||||||||||||| | | |||||| || ||| | |||||| Sbjct 23003632 TGGCTAACTCCGTGCCAGCAGCCGCGGTAAGGAAGGGGGGGGCAAGTGTTCTTCGGAATG 23003691 Query 463 ACTGGGGCGTAAAGGGTGCGTA 484 ||| | |||||||| |||| Sbjct 23003692 ACT-AGTTGTAAAGGGCACGTA 23003712 >seq3 Length=24378308 Score = 129 bits (142), Expect = 2e-27 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 239 CATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACA 298 || ||| |||||||||||| ||| |||||||||||||||||||||||||||| || | || Sbjct 19841313 CACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCA 19841254 Query 299 ATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA 357 |||||| ||||||||| | ||||| |||||||| | ||||||| |||||||| || Sbjct 19841253 ATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTTAA 19841195 Score = 77.0 bits (84), Expect = 1e-11 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||| ||||| |||||||||||||||| ||| ||||||||| |||||| ||| |||||| Sbjct 21250593 ACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAA 21250534 >seq1 Length=42845077 Score = 111 bits (122), Expect = 5e-22 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 |||||||| ||||| |||| |||||| | | ||| |||| | || || ||||| Sbjct 4880767 TAGTTGGTCGGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATC 4880826 Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||||| || Sbjct 4880827 AGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTT 4880886 Query 294 GCACAATGGGC 304 | ||||||||| Sbjct 4880887 GGACAATGGGC 4880897 Score = 77.0 bits (84), Expect = 1e-11 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 |||||| | | |||||||||||||||||||||||||||| || | |||||||| |||||| Sbjct 38103646 ACACGGCCTAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCC 38103705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599820288