Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq7 257 4e-66 seq8 221 3e-55 seq6 136 1e-29 >seq7 Length=28646061 Score = 257 bits (284), Expect = 4e-66 Identities = 293/391 (75%), Gaps = 2/391 (1%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| ||||||||||||||||||| || ||| || ||||||||||||||| | Sbjct 16308316 CGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGA 16308257 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||||| || |||||||| || | ||||| | || ||| | | |||||||| Sbjct 16308256 TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAAC 16308197 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 || || || | |||||| | ||| |||| | | ||||||| |||||| | | Sbjct 16308196 CCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGG 16308137 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 || ||||||||||||| | || || | | |||||||| |||||| || |||||| Sbjct 16308136 TGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGG 16308077 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 | | |||||||||||| ||||||| |||||||||| |||||||| |||| |||| Sbjct 16308076 CCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAG 16308017 Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTGCTCCGGTGCCGCAG 377 ||| ||||||||||||| |||||||||| | | ||| | | | | |||| | || Sbjct 16308016 TCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTCGACCCGTGCAGTGCTGTAG 16307958 Query 378 CAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||||| ||||||| || ||||||||||| Sbjct 16307957 CTAACGCGTTAAGTATCCCGCCTGGGGAGTA 16307927 Score = 221 bits (244), Expect = 3e-55 Identities = 255/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 25373398 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 25373339 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| ||| | || | ||| Sbjct 25373338 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 25373279 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||| | ||||| | || || ||||| Sbjct 25373278 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 25373225 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| Sbjct 25373224 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 25373165 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 25373164 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 25373105 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 25373104 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 25373065 >seq8 Length=28014461 Score = 221 bits (244), Expect = 3e-55 Identities = 255/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 12549090 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 12549031 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| ||| | || | ||| Sbjct 12549030 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 12548971 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||| | ||||| | || || ||||| Sbjct 12548970 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 12548917 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| Sbjct 12548916 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 12548857 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 12548856 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 12548797 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 12548796 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 12548757 >seq6 Length=36134596 Score = 136 bits (150), Expect = 1e-29 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| ||||| Sbjct 23003887 AGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTATGAAGGAACGCCAAAAGCGAA 23003946 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| ||| |||| || ||| ||| || ||||||| |||||||| ||||||||| Sbjct 23003947 GGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATT 23004006 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||| |||||||| ||||| Sbjct 23004007 AGATACCCTGGTAGTCCATGCCGTAAATGATGA 23004039 Score = 87.8 bits (96), Expect = 4e-15 Identities = 79/98 (81%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAA-TACGTAGGGGGC 60 ||| ||||| ||||||| |||||||| |||||||||||||||||||| | | |||||| Sbjct 23003615 ACTCGAGGAAGAAGCCCTGGCTAACTCCGTGCCAGCAGCCGCGGTAAGGAAGGGGGGGGC 23003674 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTA 98 || ||| | |||||| ||| | |||||||| |||| Sbjct 23003675 AAGTGTTCTTCGGAATGACTAGTTGTAAAGGGCACGTA 23003712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203199855616