Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq9 306 7e-81 >seq9 Length=29411429 Score = 306 bits (338), Expect = 7e-81 Identities = 224/259 (86%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 10192281 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 10192340 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 10192341 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 10192400 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 10192401 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 10192460 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||| | |||||||| Sbjct 10192461 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAACTCGCGTTGAC 10192520 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 10192521 TACGTCCCTGCCCTTTGTA 10192539 Score = 104 bits (114), Expect = 4e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG 236 |||||||| || ||||||||| ||| | ||||||||||| ||| | ||||| || Sbjct 10152633 CAACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATG 10152574 Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 |||||||| |||||||||| ||| |||||||||||||||||| Sbjct 10152573 GGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCC 10152532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199886336