Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq8 181 4e-43 seq2 172 2e-40 seq1 111 5e-22 seq10 95.1 4e-17 >seq8 Length=28014461 Score = 181 bits (200), Expect = 4e-43 Identities = 395/582 (68%), Gaps = 36/582 (6%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 1719357 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 1719416 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 1719417 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 1719476 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 1719477 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 1719536 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 1719537 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 1719591 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC---AT--- 290 || | ||| | | | ||||||| | |||||||| |||| | || Sbjct 1719592 TCGG-TGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGAC 1719650 Query 291 -CAGTTTTACCGCGGG------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 || || | ||| |||||| ||||| | |||| | | | || Sbjct 1719651 CCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG 1719710 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 1719711 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAG 1719768 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||||| Sbjct 1719769 GAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAG 1719827 Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517 ||||||| |||||||| ||||| | ||| || || | |||| |||| || Sbjct 1719828 TGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGATC 1719886 Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| | | ||| |||||||||||||| Sbjct 1719887 TGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 1719927 >seq2 Length=21549876 Score = 172 bits (190), Expect = 2e-40 Identities = 320/462 (69%), Gaps = 27/462 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 2265983 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 2265924 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 2265923 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 2265864 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| ||||||| || || |||| |||||| |||| || | | || Sbjct 2265863 AACCAAGATCGGATATAGCTGTTTTTCCGTGAAATCTATTTCAGTAGAGCGT--ATGATG 2265806 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || ||||||| Sbjct 2265805 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAAC 2265746 Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||||||||| | |||| | ||| | || ||| ||||| Sbjct 2265745 CCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGA----TTGGGT 2265690 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 2265689 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 2265630 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 2265629 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 2265574 Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||| || ||| |||| |||||| |||||||| ||| || Sbjct 2265573 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 2265533 >seq1 Length=42845077 Score = 111 bits (122), Expect = 5e-22 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 488564 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 488621 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||| Sbjct 488622 AGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAG 488680 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||| |||||||| ||||| | ||| || || | |||| |||| Sbjct 488681 AGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGA 488739 Query 516 TCTACCGAAGCAGTGGGAT 534 ||| ||||||| ||||||| Sbjct 488740 TCTGCCGAAGCTGTGGGAT 488758 Score = 93.3 bits (102), Expect = 1e-16 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||||||||||| ||| |||||||| ||| || ||||||| ||||| ||||||||||| | Sbjct 32888014 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 32888073 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | | | ||| || |||||||||||| |||||| Sbjct 32888074 CCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAA 32888109 >seq10 Length=24717764 Score = 95.1 bits (104), Expect = 4e-17 Identities = 122/166 (73%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 15717538 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 15717479 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| |||||||| |||| Sbjct 15717478 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGACAGCCAGGAG 15717421 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 ||| || | |||||||||| | |||||||||||||| | | |||| Sbjct 15717420 GTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAGTGCGTTATATCTCA 15717376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689599797248