Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10 805 0.0 seq9 713 0.0 seq5 125 2e-26 seq1 78.8 3e-12 >seq10 Length=24717764 Score = 805 bits (892), Expect = 0.0 Identities = 501/537 (93%), Gaps = 3/537 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 998282 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 998223 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 998222 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 998163 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||| Sbjct 998162 AGCCCGCGAAGGACTTTAATGCAAGAAAATGGTCGATGAAGACCAGTTCCGCTTCATTGA 998103 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 998102 TTAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 998046 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 998045 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 997986 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 997985 TTTCCCCGCTGATTTTGCGAAGCCCGTTCCCTTCGCTGTGGTTTCGCTAGATAGTAGATA 997926 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 997925 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 997866 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 997865 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 997806 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 997805 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCATTTTCTG 997749 >seq9 Length=29411429 Score = 713 bits (790), Expect = 0.0 Identities = 481/534 (90%), Gaps = 8/534 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 25119615 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 25119556 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 25119555 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 25119496 Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 |||||| | || ||||| |||| || || || | | || | ||||| || Sbjct 25119495 GGCCCGAGGGACTCGGGCCTTAGAGCCAAAAGGAGG--GGCCAGGCCCCGCTTCCGACTC 25119438 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 | || ||||||||| |||| ||| |||||||||||||||||||||| | ||||||| Sbjct 25119437 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCGAG-GGCTCCC 25119379 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25119378 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 25119319 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 25119318 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 25119259 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25119258 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 25119199 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25119198 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 25119139 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 25119138 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGCATC 25119085 Score = 136 bits (150), Expect = 1e-29 Identities = 188/256 (73%), Gaps = 14/256 (5%) Strand=Plus/Minus Query 286 GTCAAGCTCAACAGGGTC-TTCTTTCCCCGCTGATTCCGCCAAGCCCG---TTCCCTTGG 341 || || || || |||||| |||||||| ||||||||||| |||| | | || | | | Sbjct 7036936 GTTAACCTTAATAGGGTCATTCTTTCCTCGCTGATTCCGTCAAGGCGGCTATTTCTTCCG 7036877 Query 342 CTGT-GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 | || ||||||| ||||||||| || |||| || || ||| ||||||| |||||| || Sbjct 7036876 CCGTTGGTTTCGTTAGATAGTAATCAGTGACAATGAGAGTCTTGTTAATCTATTCATACG 7036817 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA-AGAGAGTC-ATAGTTACTCCCG 458 ||||| |||||||| | || |||||| || |||| | | || ||||||||||| | Sbjct 7036816 TGTCACAAATTAGATAA---GGTATTTGGTTATCTTATAAATCGTTTATAGTTACTCCTG 7036760 Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 |||||||| | || || | ||||| |||| ||| ||| | ||| || || |||| Sbjct 7036759 CCGTTTACGCACGGTTCATCAAATTTATTCATTTTAACAGTTAGA----AGGACAAAAAT 7036704 Query 519 CACATTGCGTCAACAT 534 || |||| || | ||| Sbjct 7036703 CATATTGTGTTAGCAT 7036688 >seq5 Length=35065507 Score = 125 bits (138), Expect = 2e-26 Identities = 124/157 (79%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 195 aaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACAC 254 || |||| ||| |||||| ||||||||||| | | | |||| ||||||||| ||||| Sbjct 9582631 AATAACGTTAAAAGTAGTGATATTTCACTTGTGA-GCGAGGGCTTCCACTTATTTTACAC 9582689 Query 255 CTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCG 314 ||||||| |||| | | ||||||| || |||||||||||| || |||||| || | Sbjct 9582690 CTCTCAAATCATCTTATGAAGTCGGTTTAAAGTCAAGCTCAA---AGTTTTCTTTTCCTG 9582746 Query 315 CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 ||||||| | ||||||| || |||| ||||||||||| Sbjct 9582747 CTGATTCTGTCAAGCCCATT-CCTTAGCTGTGGTTTC 9582782 >seq1 Length=42845077 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 32808698 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 32808757 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 32808758 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 32808803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199803776