Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq8 120 6e-25 seq7 120 6e-25 seq10 113 1e-22 seq6 107 4e-21 seq1 95.1 3e-17 seq3 89.7 1e-15 >seq8 Length=28014461 Score = 120 bits (132), Expect = 6e-25 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 12549139 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 12549198 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 12549199 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 12549258 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| |||||| || |||||||||| || Sbjct 12549259 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAATACTAC 12549318 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 12549319 GCAGGCTCATCAAACAGCG 12549337 Score = 78.8 bits (86), Expect = 2e-12 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| |||||||||||||||||||||| ||| || Sbjct 4765045 TCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGTCG 4764986 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||||| | | ||| | || | |||||| ||| Sbjct 4764985 TGTTTCAGTCCTAGTGTAGCTGATCGTCCTCTTAGA 4764950 >seq7 Length=28646061 Score = 120 bits (132), Expect = 6e-25 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 25373447 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 25373506 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 25373507 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 25373566 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| |||||| || |||||||||| || Sbjct 25373567 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAATACTAC 25373626 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 25373627 GCAGGCTCATCAAACAGCG 25373645 >seq10 Length=24717764 Score = 113 bits (124), Expect = 1e-22 Identities = 144/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 83 AAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTC 142 |||||||| || | |||| | ||||| ||| ||||| | | ||| |||| || || Sbjct 16361441 AAGAAGTTGACGACCCGTGGG-CCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTC 16361383 Query 143 GTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTT 202 | |||||| || ||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 16361382 GCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTC 16361323 Query 203 CCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTAC 262 ||| ||||| || | ||||||| || ||| ||| | | || ||| || || | Sbjct 16361322 CCAGTGTGGCTGATCATCCTCTCGGACTAGCTACTGATCATCGCCTTGGTAAGCTATTGC 16361263 Query 263 CCCGCCTACTACCTAAT 279 | | || |||| ||||| Sbjct 16361262 CTCACCAACTAGCTAAT 16361246 >seq6 Length=36134596 Score = 107 bits (118), Expect = 4e-21 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| |||||||| Sbjct 23003566 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCTCA 23003507 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||| | |||| || || ||||||||| ||| ||||| || | ||| Sbjct 23003506 CTGCTGCC-CCCCTGAGAGTCCGGGCCATGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 23003448 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| |||||| || |||||||||| || Sbjct 23003447 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGACCAACTACCTAATACTAC 23003388 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 23003387 GCAGGCTCATCAAACAACG 23003369 >seq1 Length=42845077 Score = 95.1 bits (104), Expect = 3e-17 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||| ||||| |||||||||| ||||| ||||| || ||||||||||| Sbjct 4880899 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 4880840 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| || Sbjct 4880839 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 4880780 Query 261 ACCCCGCCTACTACC 275 |||| || |||||| Sbjct 4880779 ACCCGACCAACTACC 4880765 >seq3 Length=24378308 Score = 89.7 bits (98), Expect = 1e-15 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| ||| ||||| | | ||| |||| || ||| |||||| || ||||| || Sbjct 19841210 CCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCA 19841269 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 |||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 19841270 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 19841313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068799871744