Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9 118 8e-22 >seq9 Length=29411429 Score = 118 bits (130), Expect = 8e-22 Identities = 357/546 (65%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || |||||||||| ||||||||| || | ||| ||| | Sbjct 1286316 TACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCG 1286375 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | ||| || || | || ||| | || ||| | || Sbjct 1286376 CGCCACTGGGACGCCGCGCTG-TCGCCCGACGAGCGCCACTTCGTCTCCCACGTGCTCGC 1286434 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| || || || || || ||||| ||||| | | ||| | || Sbjct 1286435 CTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGA 1286494 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||||| || | ||||| || ||||||||||||||||| ||||| ||||| |||| Sbjct 1286495 CGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 1286554 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393 ||||||||||||| |||| |||| ||||||||| | || | | || | | || | Sbjct 1286555 CTCGGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG-GACC 1286613 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | | ||| |||||||| || | || || ||| || || || || |||||| | Sbjct 1286614 GCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGC 1286673 Query 61454 ATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| || |||| | || | || || | | || || || || Sbjct 1286674 GATGGATC-----GACGGCGGCGAGCGCTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGT 1286728 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | || ||| || || || ||| ||||| ||| | ||||| || ||||| Sbjct 1286729 CGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACT 1286788 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || |||||| ||| ||| | || || ||||||||||| | || || || Sbjct 1286789 CATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGA 1286848 Query 61632 TTTTGC 61637 || || Sbjct 1286849 CTTCGC 1286854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567941855680